Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1500 176 8e-39 seq1363 127 4e-24 seq400 113 8e-20 >seq1500 Length=44508 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| || ||||| || || |||| Sbjct 4916 CCACCACGCAGACGGAGCACCAAGTGAAGTGTCGACTCCTTCTGGATATTGTAGTCGGCA 4975 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| |||||||| || || || ||||| | ||| ||||| || ||| Sbjct 4976 AGAGTACGGCCATCTTCCAACTGCTTGCCCGCAAAGATGAGACGTTGCTGGTCTGGAGGA 5035 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| |||||||||||||||||| || || || || | || || || Sbjct 5036 ATACCTTCCTTGTCCTGAATCTTTGCCTTGACGTTGTCAATAGTATCCGAAGACTCGACC 5095 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| ||||| || || ||||||||||| |||||||| Sbjct 5096 TCCAGCGTGATGGTCTTTCCAGTCAGTGTCTTGACGAAGATCTGCAT 5142 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| ||||||||||| || |||||||| ||||||| Sbjct 4688 CCGCCACGTAGACGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCA 4747 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || ||||| || || || | ||||| || || || ||||| | || ||||| || || Sbjct 4748 AGCGTCCTGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGG 4807 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| ||||| ||| || ||||| || |||||| || Sbjct 4808 ATACCCTCCTTGTCCTGAATCTTCGCCTTTACGTTGTCAATGGTATCGCTTGATTCCACC 4867 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || || || ||||| ||||||||||| || ||||| Sbjct 4868 TCCAAAGTAATCGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 4914 Score = 127 bits (140), Expect = 4e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || ||||| || || || ||||| || |||| Sbjct 5428 CCACCACGGAGGCGGAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGCA 5487 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || | | || ||||| ||||| Sbjct 5488 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCTGGTGGG 5547 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| |||||||| ||||||||||| | || || || Sbjct 5548 ATGCCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCGGAGGACTCAACC 5607 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | ||||||||| || || |||| Sbjct 5608 TCGAGGGTGATGGTCTTGCCGGTGA 5632 Score = 114 bits (126), Expect = 2e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || ||||| || || ||||| || |||| || || | || || || | ||| Sbjct 5168 TGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCCTCAAGTTGC 5227 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || |||||||| || || | || ||||| || |||||||| |||||||| || ||||| Sbjct 5228 TTTCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTG 5287 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 |||||||| ||||||||||| | || || || || | ||| ||||| ||||| ||| Sbjct 5288 GCCTTGACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTTATGGTCTTTCCGGTG 5347 Query 68439 A 68439 | Sbjct 5348 A 5348 >seq1363 Length=52244 Score = 127 bits (140), Expect = 4e-24 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || || || |||||||||||||| |||||| | Sbjct 38901 CATGACACCAGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCAGC 38842 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 || || ||| |||||||||||| ||||||||| |||| | ||||| || || Sbjct 38841 AAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTCGTGGCGTGGTAGACCTTGGTGTTGCC 38782 Query 10055 GAGTGCTGTGAA-AATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 || || | ||| | |||||||| |||||||| |||||||||| ||| || | | || Sbjct 38781 CAGAGC-GAGAAGCAGACGGTCAGCAACGAACTCAATGTACTGGCACATGAGCTTGGCGT 38723 Query 10114 TCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 ||||||| | || ||| || | |||||||| || ||| || | || |||| || | Sbjct 38722 TCATGCCGAGCAAAGCGCATGGCAGGGCGTCGCTAAGGAACTCTTGCTCAATGGCAACAG 38663 Query 10174 CTTC 10177 | || Sbjct 38662 CCTC 38659 Score = 84.2 bits (92), Expect = 4e-11 Identities = 188/274 (69%), Gaps = 14/274 (5%) Strand=Plus/Minus Query 10520 GAGCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CA 10578 |||||||||||| ||| |||||| |||| | |||| | ||||||| || Sbjct 38265 GAGCAGGGAGTAGGTCTCAGAGTGGACATTCTCCATCATGATCTGGAAGCCGTAGAAGCA 38206 Query 10579 TACGTGCCG-AGGGGTCCGTGACTTC-CTCGGCAAAGTTGTTGTTCAGGTTCTCCATCAC 10636 | |||||| |||| | || ||||| |||| ||| | | ||||||||| | || Sbjct 38205 T-CGTGCCTCAGGGATTTGT-ACTTCGCTCGAGAAACGC-TCGACCAGGTTCTCGTTGAC 38149 Query 10637 CATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATC 10696 ||||||||| | |||| |||||| |||||| ||| ||||||| ||| || || || Sbjct 38148 GATGCCATCGGAGGCTGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTC 38089 Query 10697 GTTCAG----TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGG 10752 || || || ||| ||||| | ||||| | ||| | || || || ||| Sbjct 38088 ATTGAGACGCTTGTTC----CAGTCGTGGAGATCCTTGGAGAGATCGATTTCTTCAGCGG 38033 Query 10753 TCCAGAAAGTGGCAACGGCCTTCTTGTACATCTG 10786 ||||||||| || |||||||||||||||| || Sbjct 38032 TCCAGAAAGAAGCCTCGGCCTTCTTGTACATTTG 37999 >seq400 Length=67953 Score = 113 bits (124), Expect = 8e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| || |||||||| || |||| Sbjct 23248 CCACCACGGAGACGGAGGACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCGGCA 23307 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| |||||||| || || | || ||||| || ||| Sbjct 23308 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGA 23367 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386 |||||||||||||| || ||||| |||||||| Sbjct 23368 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC 23399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921603506740800