Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq50 271 1e-67 seq1363 244 2e-59 >seq50 Length=66349 Score = 271 bits (300), Expect = 1e-67 Identities = 697/1054 (66%), Gaps = 28/1054 (3%) Strand=Plus/Minus Query 244394 AGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCT-TGCCGCA 244452 || || |||| ||||||||||||||||||| |||| | | ||||| ||||| | Sbjct 64846 AGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCTGCCG-A 64788 Query 244453 GGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGAT 244512 ||| || | || || | ||| | |||||||| || || ||||| || ||||| Sbjct 64787 CTCGAAAGGCAGGCGCAATGCGAGGAAAGCATCGGCCAGACCTTGTACGCCCATACCGAT 64728 Query 244513 GGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGAT 244572 |||| ||| || |||| ||| || || |||||||| |||| | || || Sbjct 64727 AGGTCGGTGACGGAAGTTGCTGCGGCGTGCCTCCTCAACGGGGTAGTGGTTGACTTCAAT 64668 Query 244573 CACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTA 244632 | |||||| | ||||||||||| | || ||| ||| ||| ||| ||||| | Sbjct 64667 GATCTTGTTCAAGTTGCGGGTGACAACCTGGGTGACCTCGTGAAGCTTCTGGAAGTCAAA 64608 Query 244633 CTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAG 244692 |||| | || | || || ||||| | ||||| | || || Sbjct 64607 CTCG----------CCACGCTTGTAGTCA--ACAAAAGAGGGCAGGGCAAGAGAAGCAAG 64560 Query 244693 GTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACT 244752 ||||| || || ||||| || | | ||||||| ||||||||| ||||| ||||| Sbjct 64559 ATTGCAAACAGCAACCTCATCAGGGGCAGTGTACTCGACAATCTCCGTGCACAGGTTGGA 64500 Query 244753 GCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAG 244812 || ||| ||||||| || || || ||| ||| |||||| || ||||||||||| Sbjct 64499 GCTACGGATAGTGCCCAAGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCTTGTAGAG 64440 Query 244813 CATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGC 244872 ||| ||||| || || ||| |||||| |||||| | || ||| || | | || Sbjct 64439 CATAAAGGGGTTACCAGTTTCGGTCTGGGCTTCGAGGATGGCGTACCACAGCTTCTGGGC 64380 Query 244873 CTTGACCGTCCTGCGAGCCTTGCCCTCTGC--CTCGTAGCGGGTGTACAGGGCCTCGAAC 244930 ||| || || ||||| ||||| |||||||| |||||| ||||| ||| Sbjct 64379 GCGGACAGTTTCACGGCCCTTGT--TCTGCTTCTCGTAGCTCTCGTACAGAGCCTCAAAC 64322 Query 244931 TCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCG 244990 || || |||| || | |||||||||||| |||||||||||| ||||||| Sbjct 64321 TCATCACCGTAGACGTCAGCGAGGCCGGGGCACTCGTTGGGGCACATGAGAGTCCACTCC 64262 Query 244991 CCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCC 245050 ||| |||| ||| | || |||||| || ||||||||||| || || | ||| || || Sbjct 64261 CCGTTCTCCTGGACACGCTTCATGAACAGATCGGGGATCCACAGAGCGTAGAACAGATCA 64202 Query 245051 CTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCG 245110 | || | ||| || ||| |||||| | || || | ||| ||||||| ||| Sbjct 64201 CGGGCGCGAACCTCCTCTTTGCCGTGGTTCTTGCGGAGATCAAGGAAGCCAAAGACATCG 64142 Query 245111 ACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCC 245170 ||||||| ||||| | ||| | || | || ||||| ||||||||||| |||||||| Sbjct 64141 GCGTGCCATGGCTCAAGGTAAATGGCAAAAGCACCGGGGCGCTTGTTGCCACCCTGGTCG 64082 Query 245171 ACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTG 245226 | | | ||||| |||| | | || || |||| | | ||||| || Sbjct 64081 A----CGTAGCGAGCAGTGTTGTTGTACACACGGAGCATAGGAATGAGACCGTTTGATGT 64026 Query 245227 GCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCT-GATGGACATGCCTA 245285 ||||||||||| ||||| | ||| | | | || | | | || | | || | Sbjct 64025 TCCGTTGGTGCCACCAATGTATGAGCCAGTAGCAC-GAATTCGGTGGACGTTGAGACCAA 63967 Query 245286 GTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCA 245345 ||||| ||| ||||||||| | ||| ||| |||||| || || || || || | Sbjct 63966 TACCGCCAGCGGTCTTGGAGATCAAGGCACAGGTCTTGAGTGTATCGTAGATACCGTCAA 63907 Query 245346 TGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACG 245405 |||||||| |||||| | || || ||||| || |||| ||| ||| ||| ||| | Sbjct 63906 TGCTGTCCTCCTTCATATCGATGAGGAAGCATGAAGACATCTGAGGCGAGGGAGTGCCTG 63847 Query 245406 AGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 |||||||| || || |||||| || ||||| Sbjct 63846 CATTGAACAGTGTCGGTGAGGCGTGTGTGAAGTA 63813 >seq1363 Length=52244 Score = 244 bits (270), Expect = 2e-59 Identities = 595/902 (66%), Gaps = 66/902 (7%) Strand=Plus/Plus Query 42301 TCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGG 42360 ||||| |||||||||||||| || || ||||||||| || || || || || Sbjct 37994 TCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCTGAAGAAATCGATCTCT 38053 Query 42361 CCAAGGACACGGCCGGCTGGGAGTCAC-TGTC--TGAGAACGAAAAGTTTTTCCTCAAAA 42417 ||||||| || |||| | | | || ||| ||||| || ||| || Sbjct 38054 CCAAGGATCTCCACGACTGGAACAAGCGTCTCAATGACGACGAACGCTTCTTCATCTCCC 38113 Query 42418 ACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGT 42477 || | || ||||||||||| ||||| || ||||| ||||| |||||||||| | | | Sbjct 38114 ACGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATCGTCAACGAGAACCTGGTCGAGCGTT 38173 Query 42478 TCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAG 42537 || || || || || | |||||| || |||||||||||||||||||| || | Sbjct 38174 TCTCGAGCGAAGTACAAATCCCTGAGGCACGATGCTTCTACGGCTTCCAGATCATGATGG 38233 Query 42538 AGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCG 42594 |||| || ||||||||| ||| || ||||||| |||| ||||| || ||| Sbjct 38234 AGAATGTCCACTCTGAGACCTACTCC---CTGCTCATCGACACATACATTAGCGAGCCCA 38290 Query 42595 TCGAGCGTAACGGGCTGTTCAAGGCCATGGA------GACGATGCC-------------- 42634 |||| | || ||||| ||||| || | | |||| Sbjct 38291 GGCAGCGCCAGTACCTTTTCAACGCCATTGACAACAGTAAGTTGCCCCACAACACGCTTC 38350 Query 42635 ----------------------------CTGCATCAAGAAGAAGGCGGACTGGGCGCTCA 42666 ||||||| |||||||| |||||||| || Sbjct 38351 AATTACGCGTCTAACGTGTCATAGTTCCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGC 38410 Query 42667 ACTGGATCGAGAGTCCCG-ACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTC 42725 |||||| | | | || | || || | | | | || || || || | |||||| Sbjct 38411 GATGGATC-TCTGACAAGAACTCCACCTTTGCCAACCGTCTCGTTGCATTCGCTGCCGTC 38469 Query 42726 GAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTC 42784 ||||| ||||||||| || | || || |||||||||||||||||| || ||| | Sbjct 38470 GAGGGTATCTTCTTCAGTGGATCATTTGCATCCATCTTCTGGCTCAAGAAGCGTGGTCT- 38528 Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGA 42844 |||||| || || || ||||| ||||| |||||| | |||||||| |||| | || Sbjct 38529 GATGCCTGGTCTTACTTTCTCCAACGAGCTCATCTCTCGTGACGAGGGCATGCACACCGA 38588 Query 42845 CTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCG-AAGGAGCGGGTCC 42903 ||| |||||||| || ||||| | |||| ||| |||| | |||||| |||| Sbjct 38589 CTTCGCCTGCCTGCTCTTCTC---TCTTCTCA-ACACCCGCCCCAGCAAGGAGTCTGTCC 38644 Query 42904 GGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCG 42963 |||||||||||| ||||| || | || ||| | |||||||| | | | ||||| Sbjct 38645 AGGCCATCATCACCGAGGCTGTTGCCATTGAGCAAGAGTTCCTTAGCGACGCCCTGCCAT 38704 Query 42964 TGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACC 43023 | || ||||||||||| | | ||||||||| ||||||| ||| ||| || |||| Sbjct 38705 GCGCTTTGCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATTGAGTTCGTTGCTGACC 38764 Query 43024 ATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTA 43083 ||| || | |||| || | ||||| || | || |||||||||||| | Sbjct 38765 GTCTGCTTCTCGCTCTGGGCAACACCAAGGTCTACCACGCCACGAACCCCTTCGACTTCA 38824 Query 43084 TGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACC 43143 |||||||||||||| | | |||||||||||||| ||||||||||| |||| ||||||| Sbjct 38825 TGGAGAACATCTCGCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACC 38884 Query 43144 AG 43145 || Sbjct 38885 AG 38886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944319841046400