Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1500 132 1e-25 seq1363 105 2e-17 >seq1500 Length=44508 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || ||||| ||||| | ||||| || | ||| || || || ||| Sbjct 4724 TCCTTCTGGATGTTGTAATCGGCAAGCGTCCTGCCGTCCTCAAGTTGCTTACCAGCAAAG 4783 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || | ||||| || || || ||||| || ||||| || ||||| Sbjct 4784 ATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTTACGTTG 4843 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||||| ||||| || || | || |||||||| ||||| |||||||||||| Sbjct 4844 TCAATGGTATCGCTTGATTCCACCTCCAAAGTAATCGTCTTGCCGGTGAGAGTCTTGACG 4903 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 4904 AAGATTTGCAT 4914 Score = 125 bits (138), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| |||||||| || || || || ||||| || || || || || ||| Sbjct 4952 TCCTTCTGGATATTGTAGTCGGCAAGAGTACGGCCATCTTCCAACTGCTTGCCCGCAAAG 5011 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| || || ||||| || ||||| || ||||| || || || || ||| Sbjct 5012 ATGAGACGTTGCTGG---TCTGGAGGAATACCTTCCTTGTCCTGAATCTTTGCCTTGACG 5068 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || |||| ||| || || || || |||||||| ||||| || ||||| |||||| Sbjct 5069 TTGTCAATAGTATCCGAAGACTCGACCTCCAGCGTGATGGTCTTTCCAGTCAGTGTCTTG 5128 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 5129 ACGAAGATCTGCAT 5142 Score = 93.3 bits (102), Expect = 1e-13 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || |||||||| | || || || || || || |||||||| Sbjct 5144 CCACCACGCAGACGGAGGACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCA 5203 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | ||| ||||| ||||| ||||||||||| || || ||| Sbjct 5204 AGGGTTCGGCCGTCCTCAAGTTGCTTTCCGGCGAAAATCAGACGCTGCTG---GTCCGGG 5260 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || || || || || || || | ||| || || Sbjct 5261 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCA 5320 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGT 288449 || ||||| || || ||||| ||||| Sbjct 5321 ACCTCGAGGGTTATGGTCTTTCCGGT 5346 >seq1363 Length=52244 Score = 105 bits (116), Expect = 2e-17 Identities = 160/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 269117 AAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGA 269176 |||||||| || | ||||| | ||||| || || |||| ||||| ||| | |||||| Sbjct 38678 AAGAGTTCCTTAGCGACGCCCTGCCATGCGCTTTGCTCGGCATGAACGCCAAGCTCATGT 38737 Query 269177 ATCAATATATCGAATTCGTGGCTGATCGTAT-CTTCACGGCACTCGGTTATGAGAAAGTG 269235 || || || || ||||| ||||| ||| | |||| || | || || | || || Sbjct 38738 GCCAGTACATTGAGTTCGTTGCTGACCGTCTGCTTCTCG-CTCTGGGCAACACCAAGGTC 38796 Query 269236 TACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAAC 269295 ||| | | | ||| ||||||| ||| ||||| || ||||| | || ||||| ||| Sbjct 38797 TACCACGCCACGAACCCCTTCGACTTCATGGAGAACATCTCGCTTGCTGGCAAGACCAAC 38856 Query 269296 TTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG 269340 |||||||| ||||||||| | ||||| || ||||||| ||| Sbjct 38857 TTCTTCGAGAAGCGTGTCGGTGACTACCAGAAGGCTGGTGTCATG 38901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179629612511920