Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1363 127 5e-24 >seq1363 Length=52244 Score = 127 bits (140), Expect = 5e-24 Identities = 274/408 (67%), Gaps = 14/408 (3%) Strand=Plus/Plus Query 243353 CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCA 243412 ||||||| ||||| ||| ||| |||||||||| || | | || |||||| ||| Sbjct 38501 CCATCTTCTGGCTCAAGAAGCGTGGTCTGATGCCTGGTCTTACTTTCTCCAACGAGCTCA 38560 Query 243413 TCAGTCGCGACGAGGGCCTTCACCAACAGTTCGG-----TGAGCTTATGTATTCAAAGCT 243467 || ||| ||||||||| | ||| | |||| || ||| | | ||| | | Sbjct 38561 TCTCTCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTGCTCTTCTCTCTTCTCAACA 38620 Query 243468 CCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGA 243527 || | | ||| | | || ||| | |||||||| || || |||| | || Sbjct 38621 CCCGCCCCAGCAAGGAGTCT-----GTCCAGGCCATCATCACCGAGGCTGTTGCCATTGA 38675 Query 243528 AAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTA--TTGGCATGAACTCTGAACTC 243585 | || ||| || ||||||| | |||||| |||| | ||||||||| | | ||| Sbjct 38676 GCAAGAGTTCCTTAGCGACGCCCTGCCATGC--GCTTTGCTCGGCATGAACGCCAAGCTC 38733 Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645 ||| | |||||||| || ||||| || ||||| | | |||| || || | || Sbjct 38734 ATGTGCCAGTACATTGAGTTCGTTGCTGACCGTCTGCTTCTCGCTCTGGGCAACACCAAG 38793 Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 || ||| || ||| ||||||||| | ||| |||||| ||| |||||| || || || Sbjct 38794 GTCTACCACGCCACGAACCCCTTCGACTTCATGGAGAACATCTCGCTTGCTGGCAAGACC 38853 Query 243706 AACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGTGTGATG 243753 ||||||||||| ||||||||| |||| || || ||||||| ||| Sbjct 38854 AACTTCTTCGAGAAGCGTGTCGGTGACTACCAGAAGGCTGGTGTCATG 38901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102856825734000