Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1500 129 6e-25 seq1257 87.8 2e-12 >seq1500 Length=44508 Score = 129 bits (142), Expect = 6e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41980 GACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAG 42039 |||| || | || ||| | |||||| || | ||| |||||| || || |||||||| | Sbjct 4686 GACCGCCACGTAGACGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGG 4745 Query 42040 CCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTG 42099 | || |||| |||| || || ||||||||||| || ||||| ||||||||||| | | Sbjct 4746 CAAGCGTCCTGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAG 4805 Query 42100 GCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 42158 | | | |||||||||| ||| | || | | ||| | | | || ||||| |||||| Sbjct 4806 GGATACCCTCCTTGTCC-TGAATCTTCGCCTTTACGTTGTCAATGGTATCGCTTGATTCC 4864 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || || || ||||| || || ||||| || ||||||||||| Sbjct 4865 ACCTCCAAAGTAATCGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 4914 Score = 89.7 bits (98), Expect = 6e-13 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||| ||||| || || || || || |||| || |||||||| || ||||| Sbjct 5464 TCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAG 5523 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || | ||||||||||| | ||| | || |||||||||| ||| | || | |||| | Sbjct 5524 ATCAAACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCC-TGAATCTTCGCCTTGACATT 5582 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 | | |||||| || || || |||| |||||||| ||||| || Sbjct 5583 GTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 5630 >seq1257 Length=334001 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | || |||||| || || ||||| || || ||||| || | Sbjct 8909 ACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCC 8850 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || ||||| ||||| ||||||||||| | || | || |||||| Sbjct 8849 GTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTT 8790 Query 42113 GTC 42115 ||| Sbjct 8789 GTC 8787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543201664137600