Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq50 266 3e-66 >seq50 Length=66349 Score = 266 bits (294), Expect = 3e-66 Identities = 613/917 (67%), Gaps = 6/917 (1%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | | ||||| |||||| || || ||| || ||||||||| || |||||| Sbjct 63648 AACTACCAATTCTTTGGCTTCAAGACGCTTGAGCGTTCATACCTCCTCCGCATAGATGGC 63707 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | |||| | ||||| ||||| || |||| ||||| ||||| | || ||||||||| | Sbjct 63708 AAGGTTGCTGAGCGTCCGCAACACATGCTCATGCGTGTCGCTGTTGGTATTCACGGCGAG 63767 Query 93835 GACATGCCGAATGTT-TTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGC 93893 ||||| ||| | ||| | || | | ||||| | || | || || Sbjct 63768 GACATTGAGAAGGCCATTGAGACCTATGACT-ACATGTCACAAAAATACTTCACACACGC 63826 Query 93894 CACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT 93953 | | ||||| |||||||| || || || || ||| ||||||||||| || ||||| || Sbjct 63827 CTCACCGACACTGTTCAATGCAGGCACTCCCTCGCCTCAGATGTCTTCATGCTTCCTCAT 63886 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 | |||| ||| ||| ||| || | ||| | |||||| |||||| || Sbjct 63887 CGATATGAAGGAGGACAGCATTGACGGTATCTACGATACACTCAAGACCTGTGCCTTGAT 63946 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || ||| || || || || ||| |||||| | ||||| | || || || Sbjct 63947 CTCCAAGACCGCTGGCGGTATTGGTCTCAACGTCCACCGAATTCGTGCTACTGGCTCATA 64006 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 ||| | || ||||| || || || ||||| ||| | ||||||||||| || | |||||| Sbjct 64007 CATTGGTGGCACCAACGGAACATCAAACGGTCTCATTCCTATGCTCCGTGTGTACAACAA 64066 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | | || |||||||| ||||||||||| | | | ||| |||| || | || || Sbjct 64067 CACTGCTCGCTACGTCGACCAGGGTGGCAACAAGCGCCCCGGTGCTTTTGCCATTTACCT 64126 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 ||||| |||||||| || || | ||| | || || || |||||||||||||| || Sbjct 64127 TGAGCCATGGCACGCCGATGTCTTTGGCTTCCTTGATCTCCGCAAGAACCACGGCAAAGA 64186 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 || | ||| | || || ||||||||||| ||| | || || || || ||||| || Sbjct 64187 GGAGGTTCGCGCCCGTGATCTGTTCTACGCTCTGTGGATCCCCGATCTGTTCATGAAGCG 64246 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 ||| || | ||| | |||| ||| | || ||||| || || ||||| || | || Sbjct 64247 TGTCCAGGAGAACGGGGAGTGGACTCTCATGTGCCCCAACGAGTGCCCCGGCCTCGCTGA 64306 Query 94374 CGTTT--GTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCC 94431 ||| | | ||| | | ||||| | |||| | | ||||| |||| ||||| | Sbjct 64307 CGTCTACGGTGAT-GAG-TTTGAGGCTCTGTACGAGAGCTACGAGAAGCAGAACAAGGGC 64364 Query 94432 AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACG 94491 | | | | || |||||||||| | ||| | || | ||| || || Sbjct 64365 CGTGAAACTGTCCGCGCCCAGAAGCTGTGGTACGCCATCCTCGAAGCCCAGACCGAAACT 64424 Query 94492 GGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551 |||| |||| || | | |||||| || |||| ||| ||||||| || || | Sbjct 64425 GGTAACCCCTTTATGCTCTACAAGGATGCTTGCAACCGTAAGAGCAACCAGAAGAACTTG 64484 Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611 || ||| ||||| || |||||||| |||||||||||||| ||| | || || ||| Sbjct 64485 GGCACTATCCGTAGCTCCAACCTGTGCACGGAGATTGTCGAGTACACTGCCCCTGATGAG 64544 Query 94612 ATTGCTGTGTGTAACCT 94628 ||||||| || || || Sbjct 64545 GTTGCTGTTTGCAATCT 64561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494713058174400