Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq50 174 2e-38 seq1363 125 7e-24 seq1500 87.8 2e-12 >seq50 Length=66349 Score = 174 bits (192), Expect = 2e-38 Identities = 917/1451 (63%), Gaps = 41/1451 (3%) Strand=Plus/Minus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| || || ||||| ||||| | ||| |||| | || | || ||| | | Sbjct 65142 GGTTGACAACCTGGAACTCACCCGCGAGCACACGTCGAGAGTAGATGTTAGATGTGTACG 65083 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | || ||| ||||||| || || || || || | || | || || |||||| || | Sbjct 65082 GCTCGAAGCATTCGTTGTTTCCGAGAATCTGGGAGGTCGAGGCAGTTGGCATGGGAGCGA 65023 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 ||||||||| || || | || || ||| | | |||||||| | ||| |||| Sbjct 65022 TCAACAAAGAGTTGCGTACACCATGTTGAGCAATCTTGGCCTTCAACTCTGCCCAGTCCC 64963 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGAC 153267 | || | | || || |||||||||| |||||||| | ||| || ||||| Sbjct 64962 AGAGGTCGGTGGGGGTGACGTTCCACATATCGTACTGAAGGGTTCCCTGAGAAACGGGAG 64903 Query 153268 TGCCGGCAAACGTACTGTAGCTGCCGT-CGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGC 153326 || | | || || || | | |||| | | |||||| || || Sbjct 64902 ATCCCTCGTAGGTCTCATATGGACCAAGCTCCTTGG-CAATGTCGCAGGAAGAAGTAAGA 64844 Query 153327 GCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCG 153386 || | | ||| ||||| ||| ||| || | ||||| || ||| | |||| Sbjct 64843 GCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCTGCCGACTCG 64784 Query 153387 TACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGT 153446 | |||| ||||| | || || ||||||||||| || | || | ||||| ||| Sbjct 64783 AAAGGCAGGCGCAATGCGAGGAAAGCATCGGCCAGACCTTGTACGCCCATACCGATAGGT 64724 Query 153447 CGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAATT 153506 || || ||||||||| | || | | | ||| ||||| ||| || || || Sbjct 64723 CGGTGACGGAAGTTGCTGCGGCGTGCCTCCTCAACGGGGTAGTGGTTGACTTCAATGATC 64664 Query 153507 TTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGGTC 153566 ||||| | |||||| || || | || | | | | ||| |||| ||| ||| | Sbjct 64663 TTGTTCAAGTTGCGGGTGACAACCTGGGTGACCTCGTGAAGCTTCTGGAAGTCAAAC--- 64607 Query 153567 ATTTCGTCGACGC--GTACGCATCGATT-----CACGGCAATAGACGCCAGATTACAGAC 153619 ||| | |||| ||| || | | || ||||| ||| || ||||| || || Sbjct 64606 ---TCGCC-ACGCTTGTAGTCAACAAAAGAGGGCAGGGCAAGAGAAGCAAGATTGCAAAC 64551 Query 153620 GGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTAT 153679 || ||| || | | | |||||| || ||||| | ||| |||||| || || Sbjct 64550 AGCAACCTCATCAGGGGCAGTGTACTCGACAATCTCCGTGCACAGGTTGGAGCTACGGAT 64491 Query 153680 GACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 |||||| || | ||| ||||| || || ||||| || || ||| ||||||| | || Sbjct 64490 AGTGCCCAAGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCTTGTAGAGCATAAAGGG 64431 Query 153740 TCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATG-CAGGTCCTGCGCTCGCACCC 153798 || || ||| || | ||||| ||| | || ||| | ||| || || || Sbjct 64430 GTTACCAGTTTCGGTCTGGGCTTCGAGGATGG-CGTACCACAGCTTCTGGGCGCGGACA- 64373 Query 153799 GCTGCCGATAGCGGCCCTCGCTCT------CGTATCGCTCGTACAGTCGCTCAAACTCGT 153852 | | | ||||||| | ||| |||| | ||||||||| ||||||||| | Sbjct 64372 GTTTCA-----CGGCCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCCTCAAACTCAT 64318 Query 153853 CGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGT 153912 | |||||| ||| ||||||||||| |||| | || ||||| || | |||| ||| Sbjct 64317 CACCGTAGACGTCAGCGAGGCCGGGGCACTCGTTGGGGCACATGAGAGTCCACTCCCCGT 64258 Query 153913 CGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCG 153972 | | ||| || |||||||||||| || | ||| || ||||| | || || || | Sbjct 64257 TCTCCTGGACACGCTTCATGAACAGATCGGGGATCCACAGAGCGTAGAACAGATCACGGG 64198 Query 153973 CCTTGCAATCCTCCGC--GCCCATGTTGCGTTTC--AGATTGAGCACGCTATAGATGTCG 154028 | || | ||||| | || || | | || | |||| || | || | ||| ||| Sbjct 64197 C---GCGAACCTCCTCTTTGCCGTGGTTC-TTGCGGAGATCAAGGAAGCCAAAGACATCG 64142 Query 154029 GCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCG 154085 |||||||| || |||| ||| | ||| | ||||| ||| || || ||||| ||| Sbjct 64141 GCGTGCCATGGCTCAAGGTAAATGGCAAAAGCACCGGGGCGCTTGTTGCCACCCTGGTCG 64082 Query 154086 ACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCG 154145 |||| ||| | | |||||| | || || | ||| || || ||| ||| || ||| Sbjct 64081 ACGTAGCGAGCAGTGTTGTTGTACACACGGAGCATAGGAATGAGACCGTTTGATGTTCCG 64022 Query 154146 TTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCG 154205 ||||| | || | ||| || || | | | || ||||| | ||||| ||| Sbjct 64021 TTGGTGCCACCAATGTATGAGCCAGTAGCACGAATTCGGTGGACGTTGAGACCAATACCG 63962 Query 154206 CCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTA 154265 || || ||| || || || ||| || || |||||| ||||| ||||| Sbjct 63961 CCAGCGGTCTTGGAGATCAAGGCACAGGTCTTGAGTGTATCGTAGATACCGTCAATGCTG 63902 Query 154266 TCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAA 154325 || || | ||| | ||| || ||| |||| || || | | || || || Sbjct 63901 TCCTCCTTCATATCGATGAGGAAGCATGAAGACATCTGAGGCGAGGGAGTGCCTGCATTG 63842 Query 154326 AAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATG 154385 || || || || ||||| || || |||||| ||| | || || || ||| Sbjct 63841 AACAGTGTCGGTGAGGCGTGTGTGAAGTATTTTTGTGACATGTAGTCATAGGTCTCAATG 63782 Query 154386 GCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGA 154445 || | || || || ||||||||||| || | ||||| |||||||||||||| |||||| Sbjct 63781 GCCTTCTCAATGTCCTCGCCGTGAATACCAACAGCGACACGCATGAGCATGTGTTGCGGA 63722 Query 154446 CGTTCGGCGAC 154456 || || || || Sbjct 63721 CGCTCAGCAAC 63711 >seq1363 Length=52244 Score = 125 bits (138), Expect = 7e-24 Identities = 251/367 (68%), Gaps = 25/367 (7%) Strand=Plus/Plus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| || || || ||| ||||||| | || || || ||||| || ||||||| ||| Sbjct 38530 ATGCCTGGTCTTACTTTCTCCAACGAGCTCATCTCTCGTGACGAGGGCATGCACACCGAC 38589 Query 52542 TTTGCGTGCCT---CTACTA------CAAGACGCGCGTGACCGAAAAATTGGATTCGGAC 52592 || || ||||| || || ||| || ||| || | || ||| || | Sbjct 38590 TTCGCCTGCCTGCTCTTCTCTCTTCTCAACACCCGC----CCCAGCAA--GGAGTCTG-- 38641 Query 52593 ACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCG 52652 ||| | ||| ||| ||||| || || || || | ||||| ||| | ||| Sbjct 38642 ----TCCAGGCCATCATCACCGAGGCTGTTGCCATTGAGCAAGAGTTCCTTAGCGACGCC 38697 Query 52653 CTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTG 52712 ||||| || |||| ||||||||||| || ||||||| ||||||| ||||| || Sbjct 38698 CTGCCATGCGCTTTGCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATTGAGTTCGTT 38757 Query 52713 GCGGATCGTCTGTTGGTGCAGCTC-GGGCAGC-CAAAGTACTTCAACGCTCGCAATCCGT 52770 || || |||||| | | |||| ||||| | | ||| || | |||| || || | Sbjct 38758 GCTGACCGTCTGCTTCTC--GCTCTGGGCAACACCAAGGTCTACCACGCCACGAACCCCT 38815 Query 52771 TTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCG 52830 | || || ||| | ||||| ||||||| |||||||||||||| ||||||||||| |||| Sbjct 38816 TCGACTTCATGGAGAACATCTCGCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTCG 38875 Query 52831 GCGAGTA 52837 | || || Sbjct 38876 GTGACTA 38882 >seq1500 Length=44508 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || | ||| | | |||||||| ||||||||||||||| Sbjct 5144 CCACCACGCAGACGGAGGACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCA 5203 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| ||||| || |||| | || |||||||| |||||||| || Sbjct 5204 AGGGTTCGGCCGTCCTCAAGTTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGA 5263 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | |||| || | |||||||| ||||| || Sbjct 5264 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG-TCGATGGTGTCGGAGGACTCAAC 5322 Query 138567 CTCGA 138571 ||||| Sbjct 5323 CTCGA 5327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496252226620800