Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1363 111 1e-19 seq1500 96.9 3e-15 >seq1363 Length=52244 Score = 111 bits (122), Expect = 1e-19 Identities = 340/522 (65%), Gaps = 29/522 (6%) Strand=Plus/Plus Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACT 47129 |||||| | |||| |||||||| ||||| || | || || | ||| ||| Sbjct 38377 CCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGCGATGGATCTCTGACAAGAACTCCACC 38436 Query 47130 CTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTT 47189 | ||| | ||| | | || ||||| ||||||||| |||||||| || ||| Sbjct 38437 TTTGCCAACCGTCTCGTTGCATTCGCTGCCGTCGAGGGTATCTTCTTCAGTGGATCATTT 38496 Query 47190 GCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAG 47249 || | || || | | || | || | ||||| || || || || ||||||| Sbjct 38497 GCATCCATCTTCTGGCTCAAGAAGCGTGGTCTGATGCCTGGTCTTACTTTCTCCAACGAG 38556 Query 47250 CTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTG----------TCTCTACTA 47299 || ||||| | ||||| ||| |||||||| |||| ||||| ||||| || Sbjct 38557 CTCATCTCTCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTGCTCTTCTCTCTTCT- 38615 Query 47300 CAACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGC 47359 |||||| | | | ||| ||| || | ||| | ||| | |||| || Sbjct 38616 CAACACCCGCCCC-AGCAA-----GGA-GT-----CTGTCCAGGCCATCATCACCGAGGC 38663 Query 47360 CGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAA 47419 || ||||||||| ||||| | ||| || ||||| |||| | || ||||| Sbjct 38664 TGTTGCCATTGAGCAAGAGTTCCTTAGCGACGCCCTGCCATGCGCTTTGCTCGGCATGAA 38723 Query 47420 CGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCT---CGTTCAGCT 47476 ||| || | ||| | ||||||| || || || || ||||| ||||| || || | Sbjct 38724 CGCCAAGCTCATGTGCCAGTACATTGAGTTCGTTGCTGACCGTCTGCTTCTCGCTCTGGG 38783 Query 47477 AAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCT 47536 || ||||| | |||||| || ||| || ||||| || ||| | ||||| ||||| Sbjct 38784 CAACA---CCAAGGTCTACCACGCCACGAACCCCTTCGACTTCATGGAGAACATCTCGCT 38840 Query 47537 CGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | |||||||||||||| ||||||||||| ||||| || || Sbjct 38841 TGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTA 38882 >seq1500 Length=44508 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || ||||| ||||| ||| | | ||||| || || ||||| || || Sbjct 5458 GTGGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCG 5517 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| |||||||| || || || ||||||||||||||| || ||| |||| Sbjct 5518 GCGAAGATCAAACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTG 5577 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 | | |||| |||||| | ||| || |||| ||| | || |||||||| Sbjct 5578 ACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 5630 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || |||| || | |||||| || | ||| ||||| || || || ||||||||| | Sbjct 4688 CCGCCACGTAGACGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCA 4747 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| | || || || || || ||||| |||| | |||||||| || ||||| Sbjct 4748 AGCGTCCTGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGG 4807 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| || ||| ||| | |||| || | ||| || | || || Sbjct 4808 ATACCCTCCTTGTCCTGAATCTTCGCCTTTACGTTG-TCAATGGTATCGCTTGATTCCAC 4866 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| |||||||| ||||| || || || || ||||| Sbjct 4867 CTCCAAAGTAATCGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 4914 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || ||||| ||||| ||| | | || || || || || || ||||| Sbjct 5174 GTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCG 5233 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| |||||||| || || || ||||||||||||||| ||| || |||| Sbjct 5234 GCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 5293 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 | | |||| |||||| | ||| || |||| ||| | || || ||||| Sbjct 5294 ACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTTATGGTCTTTCCGGT 5346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475491052233600