Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq50 113 4e-20 seq1500 82.4 7e-11 >seq50 Length=66349 Score = 113 bits (124), Expect = 4e-20 Identities = 421/649 (65%), Gaps = 17/649 (3%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 ||||| || || ||| ||||| ||||||||||| |||||| | || | ||||| Sbjct 63708 AAGGTTGCTGAGCGTCCGCAACACATGCTCATGCGTGTCGCTGTTGGTATTCACGGCGAG 63767 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 ||||| || || || | || || || || | ||||| ||||||| ||||| ||||| Sbjct 63768 GACATTGAGAAGGCCATTGAGACCTATGACTACATGTCACAAAAATACTTCACACACGCC 63827 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 || || ||||| || ||||| | ||||||| ||||||| || || | || Sbjct 63828 TCACCGACACTGTTCAATGCAGGCACTCCCTCGCCTCAGATGTCTTCATGCTTCCTCATC 63887 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGA-TTGCGCGTTGAT 123136 || || |||||||| ||||||||| || || | | || || || ||||| Sbjct 63888 GATATGAAGGAGGACAGCATTGACGGTATCTACGATACACT-CAAGACCTGTGCCTTGAT 63946 Query 123137 TTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAG-GCCGC-GGAAGC 123194 ||||| | ||||| || || | ||||| ||| || | | || | || Sbjct 63947 CTCCAAGACCGCTGGCGGTATTGGTCTCAACGTCCAC--CGAATTCGTGCTACTGGCTCA 64004 Query 123195 CGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCC-ATGCTGCGAGTTTACAA 123253 ||| | ||||| |||||| | ||| ||| | ||| ||||| || || ||||| Sbjct 64005 TACATTGGTGGCACCAACGGAACATCAAACGGTCTC-ATTCCTATGCTCCGTGTGTACAA 64063 Query 123254 TAACGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGGCGATCTA 123310 ||| | | || ||||||||||||| || ||| ||| || || | || || || Sbjct 64064 CAACACTGCTCGCTACGTCGACCAGGGTGGCAACAAGCGCCCCGGTGCTTTTGCCATTTA 64123 Query 123311 TCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGC 123370 || || || ||||||| ||||| | | || | || | ||||| | | Sbjct 64124 CCTTGAGCCATGGCACGCCGATGTCTTTGGCTTCCTTGATCT---CCGCAAGAACCACGG 64180 Query 123371 GGAAGAAAAG---AAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTAT 123427 |||| || ||||| ||| |||| |||||| | ||| | |||||| |||| || Sbjct 64181 CAAAGAGGAGGTTCGCGCCCGTGATCTGTTCTACGCTCTGTGGATCCCCGATCTGTTCAT 64240 Query 123428 GCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTT 123487 | || || | || |||| | |||| | |||||||| ||| | ||| |||||| | Sbjct 64241 GAAGCGTGTCCAGGAGAACGGGGAGTGGACTCTCATGTGCCCCAACGAGTGCCCCGGCCT 64300 Query 123488 GAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAG 123536 ||||| ||||| || ||||||| | |||||| | |||||| Sbjct 64301 CGCTGACGTCTACGGTGATGAGTTTGAGGCTCTGTACGAGAGCTACGAG 64349 >seq1500 Length=44508 Score = 82.4 bits (90), Expect = 7e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || |||||||| || || ||||| || || || || ||| | |||| || || Sbjct 5162 ACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCCTCA 5221 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| ||||| ||| | |||| || ||||||||||| |||||||| || || || || Sbjct 5222 AGTTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 5281 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| || | ||||||||| ||||| || ||||| || | || || Sbjct 5282 ATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTTATGGTCTTT 5341 Query 45312 CCGGT 45316 ||||| Sbjct 5342 CCGGT 5346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451993933934400