Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq50 118 2e-21 >seq50 Length=66349 Score = 118 bits (130), Expect = 2e-21 Identities = 222/324 (69%), Gaps = 2/324 (1%) Strand=Plus/Minus Query 205072 GTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATTTTTTGGGACA 205131 |||||| ||| |||| ||| |||||| ||||| || || || || | ||||| || Sbjct 64337 GTACAGAGCCTCAAACTCATCACCGTAGACGTCAGCGAGGCCGGGGCACTCGTTGGGGCA 64278 Query 205132 CATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATCCACAG 205191 ||| |||| |||| | | || | || | || ||| ||||| ||| ||||||||| Sbjct 64277 CATGAGAGTCCACTCCCCGTTCTCCTGGACACGCTTCATGAACAGATCGGGGATCCACAG 64218 Query 205192 GCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAG 205251 |||| |||||||||||||| | || | || | || ||||||| | || || Sbjct 64217 AGCGTAGAACAGATCACGGGCGCGAACCTCCTCTTTGCCGTGGTTCTTGCGGAGATCAAG 64158 Query 205252 CCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCT 205310 ||||| | | ||||||||||| ||||| | | | ||| | || || || | || Sbjct 64157 -GAAGCCAAAGACATCGGCGTGCCATGGCTCAAGGTAAATGGCAAAAGCACCGGGGCGCT 64099 Query 205311 TGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCA 205370 |||| ||||||||||| || ||||| | |||| | || || ||||| || | | Sbjct 64098 TGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGTACACACGGAGCATAGGAATGA 64039 Query 205371 GACCGTTGGCGGTCCCGTTCGTGC 205394 ||||||| | || ||||| |||| Sbjct 64038 GACCGTTTGATGTTCCGTTGGTGC 64015 Score = 116 bits (128), Expect = 6e-21 Identities = 326/493 (66%), Gaps = 8/493 (2%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCC-TGCTTCTCAGATAGTACATGC 203897 || ||| || ||||||||||| | | || | |||| || | | || |||||||||| Sbjct 65489 CTGGTCGACAGTGAACTGAATTG-GAGCAGAGGCGGCCATGGTGCGGAGGTAGTACATGC 65431 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957 ||||||| || || || ||| ||| | |||||| || | | |||| || | | | Sbjct 65430 CGGTCTTGAGACCAAGCTTCCATCCGGCAAAGTGCATCGAGGTGATCTTGCCCATGGTTG 65371 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGG 204017 | || ||||||||||||||| ||||| || || ||||||| | || || || | Sbjct 65370 GCTCCTTCATGTGAATGTTCAGCGACTGTGACTGATCAATGAAAGCACCACGGTCAGCAG 65311 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTG 204076 |||| | || ||||| |||||| || ||||| || |||||| | | ||||| |||| Sbjct 65310 CCATCTGAATGATGGTTCGCTGCGAGATTTCCCAAACGGTCTTGTAGAGCGTCT-TGGTC 65252 Query 204077 TGTTGAGGCACATCTTCCCACGTCCTG--ATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134 | | ||| || || || || || || || ||||| || | | || Sbjct 65251 TCCTCAGG--GATGTTGGGGATTCTTGCAATGGAACCACCCTCGGCAATAATGCGGTTCT 65194 Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194 || | | ||| ||||| ||||| || || ||| | ||| ||||||| | Sbjct 65193 TCATGTTCTCAGACCACAGGCCCATGTCGACGAGATCCTTGAGCAGCCATGGGTTGACAA 65134 Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254 ||| || || || | ||||| | ||| | | | | ||| ||| | || ||||| Sbjct 65133 CCTGGAACTCACCCGCGAGCACACGTCGAGAGTAGATGTTAGATGTGTACGGCTCGAAGC 65074 Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314 |||||||| |||| |||||| | ||| ||| || ||||||||||| | | || | Sbjct 65073 ATTCGTTGTTTCCGAGAATCTGGGAGGTCGAGGCAGTTGGCATGGGAGCGATCAACAAAG 65014 Query 204315 AGTTGCGCACACC 204327 ||||||| ||||| Sbjct 65013 AGTTGCGTACACC 65001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795138899318400