Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1500 138 3e-27 seq1257 114 3e-20 seq400 109 1e-18 >seq1500 Length=44508 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || |||||||| |||| |||||| || || | ||||| || || Sbjct 4703 AGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCAAGCGTCCTGCCGTCC 4762 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| || || |||||||||||||||||||| ||| || || || ||| Sbjct 4763 TCAAGTTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 4822 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| || | ||| || ||| ||| || ||||| || |||||| Sbjct 4823 TGAATCTTCGCCTTTACGTTGTCAATGGTATCGCTTGATTCCACCTCCAAAGTAATCGTC 4882 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || || || ||||| Sbjct 4883 TTGCCGGTGAGAGTCTTGACGAAGATTTG 4911 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || ||||||||||| |||| |||||||| || | ||| | |||||| Sbjct 4931 AGCACCAAGTGAAGTGTCGACTCCTTCTGGATATTGTAGTCGGCAAGAGTACGGCCATCT 4990 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || || ||||||||||| |||||||| ||| ||| ||||| ||| Sbjct 4991 TCCAACTGCTTGCCCGCAAAGATGAGACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCC 5050 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||| ||| ||| || | || || | | || || |||| |||||| ||| Sbjct 5051 TGAATCTTTGCCTTGACGTTGTCAATAGTATCCGAAGACTCGACCTCCAGCGTGATGGTC 5110 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || || || Sbjct 5111 TTTCCAGTCAGTGTCTTGACGAAGATCTG 5139 Score = 109 bits (120), Expect = 1e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||||||||| || || ||||| || | ||||||||| || | || | || || Sbjct 5443 AGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCGTCC 5502 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||| | |||||||||||| || || || || ||| Sbjct 5503 TCAAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCC 5562 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| |||||| | | || || || | ||||| ||| Sbjct 5563 TGAATCTTCGCCTTGACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTC 5622 Query 199598 TTACCCGTGA 199607 || || |||| Sbjct 5623 TTGCCGGTGA 5632 Score = 104 bits (114), Expect = 6e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || ||||| |||||||| || | ||||||||| || | || | || || Sbjct 5159 AGGACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCC 5218 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || |||||||||||||| || ||||||||||||||||| ||| || || ||| Sbjct 5219 TCAAGTTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 5278 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || || | || || ||| Sbjct 5279 TGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTTATGGTC 5338 Query 199598 TTACCCGTGA 199607 || || |||| Sbjct 5339 TTTCCGGTGA 5348 >seq1257 Length=334001 Score = 114 bits (126), Expect = 3e-20 Identities = 86/101 (85%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| ||||||||||| |||| ||||||||| || | ||| | || || Sbjct 8905 AGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCGTCC 8846 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||||||||||||||||||||||||||||||||| Sbjct 8845 TCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 8805 >seq400 Length=67953 Score = 109 bits (120), Expect = 1e-18 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| || |||||||| |||| ||||||||| || | || | ||||| Sbjct 23263 AGGACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCC 23322 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||||||||||||||| || |||||||||||||| ||| ||||| ||| Sbjct 23323 TCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCC 23382 Query 199538 TGAATCTT 199545 || ||||| Sbjct 23383 TGGATCTT 23390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178896827909880