Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1500 113 5e-20 seq1257 98.7 1e-15 seq400 96.9 4e-15 >seq1500 Length=44508 Score = 113 bits (124), Expect = 5e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || |||||||||| || ||||| |||| || ||||||||||||||||| Sbjct 5464 TCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAG 5523 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||||||||| | || | || |||||||||| |||||| ||||| | Sbjct 5524 ATCAAACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTGACATTG 5583 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | |||||| || || || || | |||||||| ||||| || Sbjct 5584 TCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 5630 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| |||| || || | |||| || || ||||| || || || Sbjct 4723 CTCCTTCTGGATGTTGTAATCGGCAAGCGTCCTGCCGTCCTCAAGTTGCTTACCAGCAAA 4782 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | |||||||||| |||||| ||| | ||| Sbjct 4783 GATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTTA-CGT 4841 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | || ||||| |||||||| |||| || || || ||||| || || || || | Sbjct 4842 TGTCAATGGTATCGCTTGATTCCACCTCCAAAGTAATCGTCTTGCCGGTGAGAGTCTTGA 4901 Query 46581 CAAAGATTTGCAT 46593 | ||||||||||| Sbjct 4902 CGAAGATTTGCAT 4914 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| || | ||| |||||| |||||||||||||||| ||||| || | Sbjct 4927 ACGGAGCACCAAGTGAAGTGTCGACTCCTTCTGGATATTGTAGTCGGCAAGAGTACGGCC 4986 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | ||||||||| || || || | || |||||||| | || | | ||||| Sbjct 4987 ATCTTCCAACTGCTTGCCCGCAAAGATGAGACGTTGCTGGTCTGGAGGAATACCTTCCTT 5046 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| ||||| ||||| ||| | | | || || || || || |||| ||||| Sbjct 5047 GTCCTGAATCTTTGCCTTGA-CGTTGTCAATAGTATCCGAAGACTCGACCTCCAGCGTGA 5105 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || ||||| || || || ||||| ||||| Sbjct 5106 TGGTCTTTCCAGTCAGTGTCTTGACGAAGATCTGCAT 5142 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||||| ||| |||||| || || |||||||||| || || || |||| || Sbjct 5162 ACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCCTCA 5221 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| |||||||| |||| ||||||||||| | || | || |||||||||| | Sbjct 5222 AGTTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 5281 Query 46505 ATCTTCTTCTTGA 46517 ||||| ||||| Sbjct 5282 ATCTTGGCCTTGA 5294 >seq1257 Length=334001 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| |||||||| |||| ||||||||||| |||||||| Sbjct 8885 CTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 8826 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || | ||||||||||| | || | || ||||||||| Sbjct 8825 GATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 8787 >seq400 Length=67953 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || ||||| | || ||||| ||||| |||||||| Sbjct 23283 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAA 23342 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 |||| |||||||||||| | || | || ||||||||| |||||| ||||| Sbjct 23343 GATCAGGCGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGA 23398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565226812612800