Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1363 221 1e-52 seq1500 109 5e-19 seq1257 105 7e-18 seq400 86.0 6e-12 >seq1363 Length=52244 Score = 221 bits (244), Expect = 1e-52 Identities = 574/874 (66%), Gaps = 67/874 (8%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | || ||| | ||| || || |||||||| Sbjct 38867 TTCTCGAAGAAGTTGGTCTTGCCAGCAAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTC 38808 Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744 | | || |||| ||||||| | ||| ||| ||||| | ||| || |||||||| Sbjct 38807 GTGGCGTGGTAGACCTTGGTGTTGCCCAGAGCGAGAAGCAGACGGTCAGCAACGAACTCA 38748 Query 132745 ATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGG 132802 ||||| || ||||| | || || | | | || |||| | |||| ||||| || ||| Sbjct 38747 ATGTACTGGCACATGAGCTTGGCGTTCATG-CCGAGCAAAGCGCAT-GGCAGGGCGTCGC 38690 Query 132803 TGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGC 132862 | || || |||||| ||||| || || ||||||| ||| || || | || || Sbjct 38689 TAAGGAACTCTTGCTCAATGGCAACAGCCTCGGTGATGATGGCCTGGACAGACTCCTTGC 38630 Query 132863 TCGGCCG----TTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCC 132918 | || || ||| | | | ||| | || ||| || |||||| |||| |||| Sbjct 38629 TGGGGCGGGTGTTG----AGAAGAGAGAAGAGCAGGCAGGCGAAGTCGGTGTGCATGCCC 38574 Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978 ||||| | || ||||| |||||| |||||| | || ||||| || || || || ||| Sbjct 38573 TCGTCACGAGAGATGAGCTCGTTGGAGAAAGTAAGACCAGGCATCAGACCACGCTTCTTG 38514 Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038 ||||| || |||| || || || ||||||| ||||||||||| ||||| || Sbjct 38513 AGCCAGAAGATGGATGCAAATGATCCACTGAAGAAGATACCCTCGACGGCAGCGAATGCA 38454 Query 133039 ACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCC 133098 || || || | | | || |||| | ||| | |||||| ||||| ||||| |||||| Sbjct 38453 ACGAGACGGTTGGCAAAGGTGGAGTTCTTGTCAGAGATCCATCGCAGAGCCCAGTCGGCC 38394 Query 133099 TTTT---------------CTTTGACGC-----ACG----------------------GC 133116 || | || |||| | ||| || Sbjct 38393 TTCTTGCGGATGCAGGGAACTATGACACGTTAGACGCGTAATTGAAGCGTGTTGTGGGGC 38334 Query 133117 ATC-----GTT-TCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGT 133168 | | ||| || |||||||| || || | | | | || || || ||| | || Sbjct 38333 AACTTACTGTTGTCAATGGCGTTGAA--AAGGTACTGGCGCTGCCTGGGCTCGCTAATGT 38276 Query 133169 AGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGC 133228 | ||||||||||| || || | || ||||| || |||||||| ||| || |||| Sbjct 38275 ATGTGTCGATGAGCAGGGAGTAGGTCTCAGAGTGGACATTCTCCATCATGATCTGGAAGC 38216 Query 133229 CGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTT 133288 |||| ||||| || ||||| | || ||||| | ||||||||||||||| || | Sbjct 38215 CGTAGAAGCATCGTGCCTCAGGGATTTGTACTTCGCTCGAGAAACGCTCGACCAGGTTCT 38156 Query 133289 CGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCT 133348 ||||||||||||| ||| ||| ||||| ||||| || ||||| |||||| ||| | Sbjct 38155 CGTTGACGATGCCATCGGAGGCTGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGTT 38096 Query 133349 CGTTGTCGTTCAAGCGC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGA 133405 ||| ||| || | ||| | ||||||| | |||||||| || || | || || Sbjct 38095 CGTCGTCATTGAGACGCTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCGATTTCTTCAG 38036 Query 133406 CGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||| || || |||||||| || |||||||| Sbjct 38035 CGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACAT 38002 >seq1500 Length=44508 Score = 109 bits (120), Expect = 5e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAG 38325 |||| || || ||||| ||| |||| || ||| || |||||| | | | | | || | Sbjct 5348 TCACCGGAAAGACCATAACCCTCGAGGTTGAGTCCTCCGACACCATCGACAATGTCAAGG 5289 Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || |||| ||||| ||||| |||||| | ||||| ||||| || |||| ||| || | Sbjct 5288 CCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATTTTCGCCGGAA 5229 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 | || || || |||| || ||||| |||||||||||| || ||||| | || |||| Sbjct 5228 AGCAACTTGAGGACGGCCGAACCCTTGCCGACTACAACATTCAGAAGGAGTCTACTCTGC 5169 Query 38446 ATTTGGTGCTGCGTTTGAGAGGCGG 38470 || | || || ||| || | || || Sbjct 5168 ATCTCGTCCTCCGTCTGCGTGGTGG 5144 Score = 102 bits (112), Expect = 8e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAG 38325 |||| ||||| ||||||||| |||| || ||| || |||||| | | | | | || | Sbjct 5632 TCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACCATCGACAATGTCAAGG 5573 Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || || | ||||| ||||| || || | ||||| ||||| | || | ||| |||| Sbjct 5572 CGAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAGCAGCGTTTGATCTTCGCCGGCA 5513 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 | ||||| || |||| |||||||| |||||||||||| || |||||| | || || | Sbjct 5512 AGCAGCTTGAGGACGGCCGCACCCTTGCCGACTACAACATTCAGAAGGAATCCACCCTCC 5453 Query 38446 A 38446 | Sbjct 5452 A 5452 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| || || || | || || || | | | Sbjct 4914 ATGCAAATCTTCGTCAAGACTCTCACCGGCAAGACGATTACTTTGGAGGTGGAATCAAGC 4855 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | || || | ||||| ||||| || || | ||||| Sbjct 4854 GATACCATTGACAACG-TAAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCA 4796 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || || || || || || |||| | || || ||| ||||| Sbjct 4795 GCAGCGTCTCATCTTTGCTGGTAAGCAACTTGAGGACGGCAGGACGCTTGCCGATTACAA 4736 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | ||||| || |||||||| ||| | | ||||| Sbjct 4735 CATCCAGAAGGAGTCCACGCTCCACTTGGTGCTCCGTCTACGTGGCGG 4688 >seq1257 Length=334001 Score = 105 bits (116), Expect = 7e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| |||||| | ||||| ||||| ||||| | ||| || || ||||| || Sbjct 8787 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAG 8846 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||||| || ||||||||||||||| ||||| |||| || || |||||||| Sbjct 8847 GACGGCCGCACTCTTGCCGACTACAACATCCAGAAGGAGTCGACCCTCCACTTGGTGCTC 8906 Query 38457 CGT 38459 ||| Sbjct 8907 CGT 8909 >seq400 Length=67953 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| || || |||||| | ||||| ||||| || || | ||| || || Sbjct 23390 AAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGAAAG 23331 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 || || || || | |||||||| ||||||||||||||| ||||| | || || || Sbjct 23330 CAACTCGAGGATGGCCGCACCCTTGCCGACTACAACATCCAGAAGGAGTCAACACTCCAC 23271 Query 38448 TTGGTGCTGCGT 38459 ||||| || ||| Sbjct 23270 TTGGTCCTCCGT 23259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500162546457600