Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq193 293 3e-74 seq50 116 5e-21 seq349 109 7e-19 >seq193 Length=97280 Score = 293 bits (324), Expect = 3e-74 Identities = 517/747 (69%), Gaps = 10/747 (1%) Strand=Plus/Plus Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAAT 7463 ||||||| ||||| | ||| || |||| | |||||| | || | |||||| | Sbjct 69895 CTTTCTTGTGTTTTCTTTTGAATTCTTGTGTGAAGTGGTTTACAAGACGGTTATCGAAGT 69954 Query 7464 CTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAA 7523 |||||||||||||||| || || || || || | ||||| || |||||||| |||||| Sbjct 69955 CTTCACCACCCAAGTGAGTGTCACCTGCAGTGGACTTGACCTCGAAGATACCCTCTTCAA 70014 Query 7524 TGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTAT 7583 || | || | |||||||| || ||||||||||||| ||| || ||||| || || | Sbjct 70015 TGGTCAAGAGAGAAACATCGAAAGTACCACCACCCAAGTCGAAGATGAGGACATTGCGCT 70074 Query 7584 CGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAA 7643 | | | | ||||| ||||||||||| ||||| || || || || || || || || | Sbjct 70075 CACCCTGGGTCTTCTTGTCGAGACCGTAGGCGATGGCAGCGGCGGTAGGCTCGTTGATGA 70134 Query 7644 TAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 ||| || |||| || ||||| || || | ||||| || || || || ||||| || Sbjct 70135 TACGGAGGACA-TTGAGGCCGGCGATGAGACCAGCATCCTTAGTGGCCTGACGTTGTGAG 70193 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 ||||| |||||||| ||||| || ||||| |||| |||| | |||||| || || Sbjct 70194 TCGTTGAAGTAGGCTGGGACAGTGACGACAGCGTTGTTGACGGTTCCACCGAGGTAGGAC 70253 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || || | || |||| || || || ||||| ||||| ||||| || | | || ||| Sbjct 70254 TCTGCAGTCTCCCTCATCTTAGTCAGGACCATAGATGAGATCTCCTCTGGTGTGAA-TGT 70312 Query 7823 -TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAAC 7881 ||| || || || || || || | || | || || |||| | ||| || Sbjct 70313 CTTCTCCTCGCCCTTGAACTCGACCTGGATGACAGGCTT---GCCAGCCTTGTCGATGAC 70369 Query 7882 CTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGAT 7941 ||| | | | | ||||| ||| | ||||||| || | ||||| | || || Sbjct 70370 CTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCAGCATCGGCGAACTTGCGACCAAT 70429 Query 7942 AAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGC 8001 || ||||| ||||| || || ||||| | ||||||||||| |||||||| |||| Sbjct 70430 GAGGCGCTTGGCATCGAAGACGGTGTTGGTAGGGTTCATGGCGACCTGGTTCTTTGCCGA 70489 Query 8002 GTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATT 8061 ||| || || ||||| || | || || || || ||| |||| || || || || || Sbjct 70490 GTCACCAATGAGACGCTC---GGTGTCGGTGAAGGCAACGAACGAGGGTGTTGTGCGGTT 70546 Query 8062 CCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATA 8121 || |||||||| || || || || | |||||| | | | ||| |||||| || || || Sbjct 70547 ACCCTGGTCGTTGGCGATGATCTCAATGCGGTCATCTCGGAAGATGCCGACACATGAGTA 70606 Query 8122 CGTTGTTCCTAAATCAATACCGATTGC 8148 || ||||| | ||| || ||||| || Sbjct 70607 TGTGGTTCCAAGATCGATTCCGATCGC 70633 Score = 118 bits (130), Expect = 1e-21 Identities = 191/275 (69%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | | |||||| || ||||| | || ||||| ||||| |||||||||||||| Sbjct 69369 TCACCGGACAGGATGGCAGCCTGGACAGCAGCACCGTAGGCGACAGCCTCATCGGGGTTG 69428 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || | || || ||||| || | || || | ||| | || | || ||| Sbjct 69429 ATGGACTTGTTGGGCTCCTTTCCGTTGAAGAAGTCGGAGACCATCTTCTGGACCTTGGGG 69488 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || ||||||||||| | ||||| || | || || || |||||||| | Sbjct 69489 ATACGGGTGGATCCACCGACGAGGACGATCTCGTGGACAGAGGACTTGTCGATCTTGGCA 69548 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || || |||||||| ||||| ||||| | |||| ||||| ||| Sbjct 69549 TCGCGGAGGACACGCTCGACAGGCTCCATGGTGGAGCGGAAGAGGTCCTGGCACAGCTCC 69608 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATC 7284 ||||| || |||||||| ||||| || ||||| || Sbjct 69609 TCAAAGCGGGCACGGGTGATGGAGGTGTAGAAGTC 69643 >seq50 Length=66349 Score = 116 bits (128), Expect = 5e-21 Identities = 336/516 (65%), Gaps = 11/516 (2%) Strand=Plus/Minus Query 105562 ACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCC 105621 || || |||||||||| ||| || ||||||| || | || || || || | || Sbjct 64249 ACACGCTTCATGAACAGATCGGGGATCCACAGAGCGTAGAACAGATCACGGGCGCGAACC 64190 Query 105622 TCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGT 105681 || || | || || ||| || | || || || | | | ||||||||||||||| Sbjct 64189 TCCTCTTTGCCGTGGTTCTTGCGGAGATCAAGGAAGCCAAAGACATCGGCGTGCCATGGC 64130 Query 105682 TCTAAATAGACTGCAATAG-ACC------CTTTACGACGCCCCGCTTGATTGACATATCT 105734 || | || | |||| || ||| ||| | | ||| || | ||| || | Sbjct 64129 TCAAGGTAAATGGCAAAAGCACCGGGGCGCTTGTTGCCACCC----TGGTCGACGTAGCG 64074 Query 105735 TGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTTCC 105794 || || ||| ||||| || | ||| ||||| | ||| | |||||||| || || || Sbjct 64073 AGCAGTGTTGTTGTACACACGGAGCATAGGAATGAGACCGTTTGATGTTCCGTTGGTGCC 64014 Query 105795 ACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCA 105854 || ||| | ||| | | ||||| | ||| |||| | |||||||| ||||| Sbjct 64013 ACCAATGTATGAGCCAGTAGCACGAATTCGGTGGACGTTGAGACCAATACCGCCAGCGGT 63954 Query 105855 CTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCCTT 105914 ||| ||| ||||| || | ||||||||| |||||||| || || || ||||| Sbjct 63953 CTTGGAGATCAAGGCACAGGTCTTGAGTGTATCGTAGATACCGTCAATGCTGTCCTCCTT 63894 Query 105915 ATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGT 105974 | | || ||||| || || ||||| || || ||| || || ||||||||||| || Sbjct 63893 CATATCGATGAGGAAGCATGAAGACATCTGAGGCGAGGGAGTGCCTGCATTGAACAGTGT 63834 Query 105975 TGGTGTTGCATGAATGAACAAACCTTTCGATAACGCTTCGTATGTTTCCAGGACGTGATC 106034 |||| || || |||| | || || | || || || || | | | | || Sbjct 63833 CGGTGAGGCGTGTGTGAAGTATTTTTGTGACATGTAGTCATAGGTCTCAATGGCCTTCTC 63774 Query 106035 AATATCGTGTCCATGAATACCAATAGCGACGCGCAT 106070 ||| || | || |||||||||| |||||| ||||| Sbjct 63773 AATGTCCTCGCCGTGAATACCAACAGCGACACGCAT 63738 >seq349 Length=109538 Score = 109 bits (120), Expect = 7e-19 Identities = 204/299 (68%), Gaps = 3/299 (1%) Strand=Plus/Minus Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543 || || || || || ||||| |||| ||| || | ||||| | | || ||||| Sbjct 106969 TCTCCGGCAGTAGCCTTGACAGTGAAGACACCACCCTGAATGTGCAGAAGAGACACATCG 106910 Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTCTTA 7600 || ||||||||||| || || | ||||| |||||| | || | ||| ||| | Sbjct 106909 AAAGTACCACCACCGAGATCGTAGATGAGGACGTTCCTCTCCTTGTCGGATTTACCGGCA 106850 Query 7601 TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGG 7660 | |||||||| |||||||| || || || || || || || ||||| ||| ||| ||| Sbjct 106849 CCAAGACCGTAAGCGATAGCAGCGGCGGTAGGCTCGTTGATGATACGGAGAACGTTGAGG 106790 Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720 |||||||| | | ||||| || || || || || || ||||| ||||| || || Sbjct 106789 CCAGCAATGGCACCAGCATCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAAGCAGGC 106730 Query 7721 ACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 || || | ||| || | | || ||||| ||||| | | || |||| || ||||| Sbjct 106729 ACAGTGATGACGGCCTTCTCAACCTTCTTTCCGAGCTTGGTCTCAGCGACCTCCTTCAT 106671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635119779777600