Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq50 215 6e-51 seq1283 129 7e-25 seq1363 84.2 3e-11 >seq50 Length=66349 Score = 215 bits (238), Expect = 6e-51 Identities = 576/869 (66%), Gaps = 25/869 (3%) Strand=Plus/Minus Query 110280 GGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAA 110339 ||| || |||| ||| ||||||||||| |||| | ||| || | | ||||| || | Sbjct 64580 GGGCAGGGCAAGAGAAGCAAGATTGCAAACAGCAACCTCATCAGGGGCAGTGTACTCGAC 64521 Query 110340 AATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGA 110399 ||| ||||| |||| |||||| || || |||||||||||||| || || Sbjct 64520 AATCTCCGTGCACAGGTTGGAGCTACGGATAGTGCCCAAGTTCTTCTGGTTGCTCTTACG 64461 Query 110400 GTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAAT 110459 |||||| |||||||| |||||||| | ||| |||||||||| ||||| | | ||| || Sbjct 64460 GTTGCAAGCATCCTTGTAGAGCATAAAGGGGTTACCAGTTTCGGTCTGGGCTTCGAGGAT 64401 Query 110460 GGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCT-----TCCTCCTC 110513 ||| | ||| | | || | |||| ||||||| || || | ||| | || ||| Sbjct 64400 GGCGTACCACAGCTTCTG-GGCGCGGACAGT----TTCACG-GCCCTTGTTCTGCTTCTC 64347 Query 110514 GTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTT 110573 ||| | ||||| ||||||| || | ||||| || |||| || || || Sbjct 64346 GTAGCTCTCGTACAGAGCCTCAAACTCATCACCGTAGACGTCAGCGAGGCCGGGGCACTC 64287 Query 110574 GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGG 110633 || ||| || | ||| | ||| | || ||||| || | |||||||||||| || || Sbjct 64286 GTTGGGGCACATGAGAGTCCACTCCCCGTTCTCCTGGACACGCTTCATGAACAGATCGGG 64227 Query 110634 AATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCG 110693 ||||||| || |||| || |||||| ||| |||| || | || ||||| ||| Sbjct 64226 GATCCACAGAGCGTAGAACAGATCACGGGCGCGAACCTCCTCTTTGCCGTGGTTCTTGCG 64167 Query 110694 TAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATA------GACAGCGAT 110747 || || | ||| | | || ||| | ||||||||| || || || | ||| Sbjct 64166 GAGATCAAGGAAGCCAAAGACATCGGCGTGCCATGGCTCAAGGTAAATGGCAAAAGCACC 64107 Query 110748 GGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAG 110807 || | ||| | | || |||||| || ||||| || ||| ||| | || | ||| Sbjct 64106 GGGGCGCTT--GTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGTACACACGGAG 64050 Query 110808 CATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACG 110867 ||||||||| | || | ||| || || || || | ||| || | | ||||| Sbjct 64049 CATAGGAATGAGACCGTTTGATGTTCCGTTGGTGCCACCAATGTATGAGCCAGTAGCACG 63990 Query 110868 AATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTG 110926 ||| ||||| | | ||||||||| || || ||| || ||||| ||| Sbjct 63989 AATTCGGTGGACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAGGTCT- 63931 Query 110927 TGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAG 110986 |||||||| | || ||||| ||||| || |||| | | || || ||||| |||| Sbjct 63930 TGAGTGTATCGTAGATACCGTCAATGCTGTCCTCCTTCATATCGATGAGGAAGCATGAAG 63871 Query 110987 ACATCTGAGGACGA-GGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGA 111045 |||||||||| ||| || || || |||||||| ||||| |||| || || |||| Sbjct 63870 ACATCTGAGG-CGAGGGAGTGCCTGCATTGAACAGTGTCGGTGAGGCGTGTGTGAAGTAT 63812 Query 111046 CCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCA 111105 ||| ||||| | || || || || | || | || | |||||||||||| Sbjct 63811 TTTTGTGACATGTAGTCATAGGTCTCAATGGCCTTCTCAATGTCCTCGCCGTGAATACCA 63752 Query 111106 ATGGCAACTCGCATGAACATATATTGAGG 111134 | || || ||||||| ||| | ||| || Sbjct 63751 ACAGCGACACGCATGAGCATGTGTTGCGG 63723 Score = 111 bits (122), Expect = 2e-19 Identities = 291/439 (66%), Gaps = 10/439 (2%) Strand=Plus/Minus Query 109399 GCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGC 109458 ||| | | ||| || || ||||| || || ||||||||| ||||||| || | ||| Sbjct 65455 GCCATGGTGCGGAGGTAGTACATGCCGGTCTTGAGACCAAGCTTCCATCCGGCAAAGTGC 65396 Query 109459 ATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGA 109518 || || | || ||| | || || || ||| | ||||| |||||| |||||| Sbjct 65395 ATCGAGGTGATCTTGCCCATGGTTGGCTCCTTCATGTGAATGTTCAGCGACTGTGACTGA 65336 Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTG--GCTA-ATTTCC 109575 || ||||| |||||| ||||| ||||| | ||||| || | || | |||||| Sbjct 65335 TCAATGAAAGCACCACGGTCAGCAGCCATCTGAATGATGG---TTCGCTGCGAGATTTCC 65279 Query 109576 CAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAG 109635 || || |||||||| | ||||| | || || || |||| ||| || ||| || Sbjct 65278 CAAACGGTCTTGTAGAGCGTCTTGGTCTCCTCAGGGATGTTGGGGATTCTTGCAATGGAA 65219 Query 109636 CCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGA 109695 ||||| | | ||| | | |||||| | | ||||| || || | | |||| Sbjct 65218 CCACCCTCGGCAATAATGCGGTTCTTCATGTTCTCAGACCACAGGCCCATGTCGACGAGA 65159 Query 109696 TCGTCAACAAG--ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGT 109753 || | | || ||| |||||| || || ||||| || || ||||| || Sbjct 65158 TCCTTGAGCAGCCATGG--GTTGACAACCTGGAACTCACCCGCGAGCACACGTCGAGAGT 65101 Query 109754 AGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAG 109813 ||||||||| ||||| || ||||| || || ||||| || || || || | || || | Sbjct 65100 AGATGTTAGATGTGTACGGCTCGAAGCATTCGTTGTTTCCGAGAATCTGGGAGGTCGAGG 65041 Query 109814 CTGTGGGCATGGGAGCCAT 109832 | || ||||||||||| || Sbjct 65040 CAGTTGGCATGGGAGCGAT 65022 >seq1283 Length=43926 Score = 129 bits (142), Expect = 7e-25 Identities = 320/480 (67%), Gaps = 27/480 (6%) Strand=Plus/Minus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 |||||||||||| || || | || || | ||| |||| || || || ||| | || Sbjct 16713 ATCGAAACGACCAGGTCGCATAAGGGCCTTATCCAGAACGTCCGGTCGATTGGTACCTGC 16654 Query 11565 AATGACTACAA--TGC-CAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTT 11621 || ||| || | ||| |||| |||| ||||| ||||| || ||||| | ||| || Sbjct 16653 AAGGACAACTACTTGCTCAGTGGTATTG---AAACCATCCATCTCGGTGAGGATCTGATT 16597 Query 11622 GATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC---------TGCCGAACGCTT 11672 || || ||||||||| |||||| |||||| | |||||| Sbjct 16596 GAGGGTGGCTTCACGCTCGTCGTTGCC------ACCACCAAAGTTTTGTTTCGAACGAGC 16543 Query 11673 CTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTG 11732 ||| | || || || ||||||||||| | ||| || ||| | || || | Sbjct 16542 ACGACCAATGGCATCGATTTCATCGATGAAGATGATGCATGGTGTACTCTTCCGCGCATT 16483 Query 11733 TTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGC 11792 |||| || || | || ||| || ||||||||||| |||||||| ||||| | || Sbjct 16482 GGCGAACAGGTCTCTGACTCGCGAAGCACCAACACCTACAAACATCTCGACGAACTCTGA 16423 Query 11793 GGCA-GAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851 || |||||||| |||||| ||| ||||| |||||| | || || ||||| | Sbjct 16422 TCCACTGACACTGAA-GAAGGGTACACCCGACTCTCCAGCGGTAGCCTTGGCAAGGAGTG 16364 Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACT 11909 ||||||| ||||| || | |||| ||||| ||| ||||| |||||||| || || || Sbjct 16363 TCTTACCAGTACCTGGGGATCCAGAGAGAATGGCACCACGAGGGATCTTTGCGCCGAGCT 16304 Query 11910 TCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 || | | || | || | |||||| ||| |||| |||| || |||| |||||| Sbjct 16303 TC--TGGAATCGGCCGGGATCCTTGAGAAAGGAGACAAACTCCATAATCTCCTGCTTGGC 16246 >seq1363 Length=52244 Score = 84.2 bits (92), Expect = 3e-11 Identities = 132/186 (71%), Gaps = 5/186 (3%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || || || |||||||||||||| || ||| ||| |||||||| || || | ||| Sbjct 38576 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTAAGACCAGGCATCAGACCACGCTTC 38517 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||||| ||| |||| |||||||| ||||| || ||||| Sbjct 38516 TTGAGCCAGAAGATGGATGCAAATGATCCACTGAAGAAGATACCCTCGACGGCAGCGAAT 38457 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GAACCACTTGAGAGCCCAGTT 119689 || | ||||| | || |||||| ||| |||||| || ||| |||||||||| Sbjct 38456 GCAACGAGACGGTTGGC-AAAGGTGGAGTTCTTGTCAGAGATCCATCGCAGAGCCCAGTC 38398 Query 119690 GGCCTT 119695 |||||| Sbjct 38397 GGCCTT 38392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588963925992000