Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq50 324 2e-83 >seq50 Length=66349 Score = 324 bits (358), Expect = 2e-83 Identities = 1150/1772 (65%), Gaps = 35/1772 (2%) Strand=Plus/Minus Query 105558 TGAACTGAATTGG-GC-GCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTCTTGAG 105615 ||||||||||||| || | | | ||| | | ||||| |||||||| ||||||||||| Sbjct 65478 TGAACTGAATTGGAGCAGAGGCG--GCCATGGTGCGGAGGTAGTACATGCCGGTCTTGAG 65421 Query 105616 TCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCAT 105675 || | ||||| || | ||||| || | || |||| ||| ||||| | ||| Sbjct 65420 ACCAAGCTTCCATCCGGCAAAGTGCATCGAGGTGATCTTGCCCATGGTTGGCTCCTTCAT 65361 Query 105676 GAAAAGATTCAT--ACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCA 105733 | || |||| ||| ||||| | |||||||| |||||| | || ||||| | | Sbjct 65360 GTGAATGTTCAGCGACTGTGACT--GATCAATGAAAGCACCACGGTCAGCAGCCATCTGA 65303 Query 105734 ATGACATCCTTCAT--CTTGATTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTG 105791 |||| | ||| | ||||||||| || || |||||| ||||| | || || | Sbjct 65302 ATGA--TGGTTCGCTGCGAGATTTCCCAAACGGTCTTGTAGAGCGTCTTGGTCTCCTCAG 65245 Query 105792 GGATATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACCATGAGATCCTTCATATCCT 105851 |||| | | ||| || ||| ||||| ||| | | ||| | | |||||| | || Sbjct 65244 GGATGTTGGGGATTCTTGCAATGGAACCACCCTCGGCAATAATGCGGTTCTTCATGTTCT 65185 Query 105852 TGGACCAAAGACCAATCTTCTTGAGATCATTGACGAG--ATGCTTGTTGACAATCACAAA 105909 ||||| || || || | |||||| |||| || ||| |||||||| | || Sbjct 65184 CAGACCACAGGCCCATGTCGACGAGATCCTTGAGCAGCCATGG--GTTGACAACCTGGAA 65127 Query 105910 CTCTCCCGCGAGGGTTCTTCTCAGA-TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCAT 105968 ||| |||||||| | || ||| |||||||| | ||||| || || |||||||| | Sbjct 65126 CTCACCCGCGAGCACACGTCG-AGAGTAGATGTTAGATGTGTACGGCTCGAAGCATTCGT 65068 Query 105969 TATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTAC 106028 | || || | || || | ||| ||||| |||||||| || || ||||| | | ||| | Sbjct 65067 TGTTTCCGAGAATCTGGGAGGTCGAGGCAGTTGGCATGGGAGCGATCAACAAAGAGTTGC 65008 Query 106029 GAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTT 106087 | | ||| | || || |||| | | ||||||| || | | | || Sbjct 65007 GTACACCATGTTGAGCAATCTTGGCCTTCAACTCTGCCCAGTCCCAGAGGTCGGTGGGGG 64948 Query 106088 TCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTC 106147 | || |||| ||||||| | ||||| || || || |||||| ||||| | ||| Sbjct 64947 TGACGTTCC-ACATATCGTACTGAAGGGTTCCCTGAGAAACGGGAGATCCCTCGTAGGTC 64889 Query 106148 TCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATG 106207 ||||| | ||| | | | || | || ||| | || | ||||| || ||| Sbjct 64888 TCATATGGACCAAGCTCCTTGGCAATGTCGCAGGAAGAAGTAAGAGCAGCGTGGTAGATG 64829 Query 106208 GTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCAC 106267 || || ||||| | || | || |||||| || | || || || | | || || | Sbjct 64828 GTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCTGCCGACTCGAAAG-GCAG--GCGC 64772 Query 106268 AAA---ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATA 106324 || | || |||| || |||||||| || |||| ||| ||||||| ||| || | Sbjct 64771 AATGCGAGGAAAGCATCGGCCAGACCTTGTACGCCCATACCGATAGGTCGGTGACGGAAG 64712 Query 106325 TTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTT 106384 || || || ||||||||| || || ||||||| ||| | || Sbjct 64711 TTGCTGCGGCGTGCCTCCTCAACGGGGTAGTGGTTGACTTCAATGATCTTGTTCAAGTTG 64652 Query 106385 TTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCA 106444 ||| |||| || |||| || ||||| || | | ||||| || | || | Sbjct 64651 CGGGTGACAACCTGGGTGACCTCGTGAAGCTTCTGGAAGTCAAACTCGCCACGCTTGTAG 64592 Query 106445 TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT 106504 | ||| | || ||||| | || || | |||||||||||| |||||| | Sbjct 64591 TCAACAAAAGAGGGCAGGGCAAGAGAAGCAAGATTGCAAACAGCAACCTCATCAGGGGCA 64532 Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 |||||||| | ||| || || |||| |||||| || || || ||||| ||||| ||| Sbjct 64531 GTGTACTCGACAATCTCCGTGCACAGGTTGGAGCTACGGATAGTGCCCAAGTTCTTCTGG 64472 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || ||||| |||||| ||||||||||||||||| |||| | || || || ||||| Sbjct 64471 TTGCTCTTACGGTTGCAAGCATCCTTGTAGAGCATAAAGGGGTTACCAGTTTCGGTCTGG 64412 Query 106625 GACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGT-CCCT 106682 | | ||| || || | ||||| | || | ||| | ||| | | ||||| | || Sbjct 64411 GCTTCGAGGATGGCGTACCACAGCTTCTG-GGCGCGGACAGTTTC-ACGGCCCTTGTTCT 64354 Query 106683 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 106742 | |||||| | ||| || || |||||||| ||||| |||| | ||| || | Sbjct 64353 GCTTCTCGTAGCTCTCGTACAGAGCCTCAAACTCATCACCGTAGACGTCAGCGAGGCCGG 64294 Query 106743 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAA 106802 | || || || || | |||| ||| | || ||||| || ||||||||||| | Sbjct 64293 GGCACTCGTTGGGGCACATGAGAGTCCACTCCCCGTTCTCCTGGACACGCTTCATGAACA 64234 Query 106803 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGT 106862 | || || |||||||| | | || ||||| | ||| |||| || | || |||| Sbjct 64233 GATCGGGGATCCACAGAGCGTAGAACAGATCACGGGCGCGAACCTCCTCTTTGCCGTGGT 64174 Query 106863 TGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 106922 | || | |||||||| | | || ||| ||||||||||||||||| || | || | Sbjct 64173 TCTTGCGGAGATCAAGGAAGCCAAAGACATCGGCGTGCCATGGCTCAAGGTAAATGGCAA 64114 Query 106923 TAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACG 106978 || || | | | | ||| | || | || ||||| || ||| ||| | || Sbjct 64113 AAGCACCGGGGCGCTTGTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGTACACA 64055 Query 106979 CGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTG 107038 || ||||| ||||| | ||| | |||| || || || || | ||| || | | Sbjct 64054 CGGAGCATAGGAATGAGACCGTTTGATGTTCCGTTGGTGCCACCAATGTATGAGCCAGTA 63995 Query 107039 GCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACAC 107098 || | | |||| || | |||||||| ||||| ||| ||||| ||||| Sbjct 63994 GCACGAATTCGGTGGACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAG 63935 Query 107099 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 107158 | | || || | |||||||||| || ||||||||| | |||| |||||||| Sbjct 63934 GTCTTGAGTGTATCGTAGATACCGTCAATGCTGTCCTCCTTCATATCGATGAGGAAGCAT 63875 Query 107159 CTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 107218 |||||||| || || || || |||||||| || || |||| ||||| |||| Sbjct 63874 GAAGACATCTGAGGCGAGGGAGTGCCTGCATTGAACAGTGTCGGTGAGGCGTGTGTGAAG 63815 Query 107219 ATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATG 107278 ||| ||||| | ||| || ||||| | | | |||||||| || ||||| || Sbjct 63814 TATTTTTGTGACATGTAGTCATAGGTCTCAATGGCCTTCTCAATGTCCTCGCCGTGAATA 63755 Query 107279 CCGATGGCCACACGCATAAACATGTATTgggg 107310 || | || |||||||| | ||||| ||| || Sbjct 63754 CCAACAGCGACACGCATGAGCATGTGTTGCGG 63723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589968705393600