Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1500 100 2e-16 >seq1500 Length=44508 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||| || || ||||| | ||| | || |||| ||| Sbjct 4934 ACCAAGTGAAGTGTCGACTCCTTCTGGATATTGTAGTCGGCAAGAGTACGGCCATCTTCC 4993 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || || ||||| || || |||||||||||| | || | || |||||||| | Sbjct 4994 AACTGCTTGCCCGCAAAGATGAGACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGA 5053 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | ||| || || | || ||||| ||| Sbjct 5054 ATCTTTGCCTTGACGTTGTCAATAGTATCCGAAGACTCGACCTCCAGCGTGATGGTCTTT 5113 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||| || |||||||||||| Sbjct 5114 CCAGTCAGTGTCTTGACGAAGATCTGCATA 5143 Score = 89.7 bits (98), Expect = 3e-13 Identities = 125/173 (72%), Gaps = 8/173 (5%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| | |||| |||| | || || || || |||||||| || Sbjct 5180 TCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCGGCGAAA 5239 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| ||||| || Sbjct 5240 ATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC--AT 5297 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGA 34959 | ||||| || || |||||| |||| ||||||||| ||||| |||| Sbjct 5298 --TGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTTATGGTCTTTCCGGTGA 5348 Score = 87.8 bits (96), Expect = 1e-12 Identities = 125/174 (72%), Gaps = 8/174 (5%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| ||||| | |||| | || | || || ||||| || ||||| || Sbjct 5463 TTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAA 5522 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || ||||||||| | || | ||||||||||| ||||||| ||||| | Sbjct 5523 GATCAAACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTGAC--A 5580 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGA 34959 | | ||||| || || |||||| |||| ||| ||||| || || |||| Sbjct 5581 T--TGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGA 5632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324627111385920