Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq50 226 5e-54 seq1363 158 2e-33 >seq50 Length=66349 Score = 226 bits (250), Expect = 5e-54 Identities = 824/1271 (65%), Gaps = 49/1271 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 || || |||||||||||||||||||| |||||| ||||||| |||||||||| | Sbjct 64849 GTAAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCTGCC 64790 Query 221477 GAAGTGAAGGGCATACGCAGCATCTGA--AAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534 || ||| |||| |||| || || || | |||||||| || ||||| || |||| Sbjct 64789 GACTCGAAAGGCAGGCGCA--ATGCGAGGAAAGCATCGGCCAGACCTTGTACGCCCATAC 64732 Query 221535 CGATGGGCCTGTGTCTCCTGTTGGAAGCGGCC-GCTTCTGGCACGGGATAAAAGTTGACG 221593 |||| || | ||| | |||| ||||| || || ||||| || |||||| Sbjct 64731 CGATAGGTCGGTGACGGAAGTTGCT-GCGGCGTGCCTCCTCAACGGGGTAGTGGTTGACT 64673 Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653 || || | ||||| | ||| | |||| || | |||||| ||||||||| Sbjct 64672 TCAATGATCTTGTTCAAGTTGCGGGTGACAACCTGGGTGACCTCGTGAAGCTTCTGG--- 64616 Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713 || | |||||||| | | || | || ||||||| | ||||||| Sbjct 64615 ---AAGTCAAACTCGCCACGCTTGTAG------TCAACAAAAGAGGGCAGGGCAAGAGAA 64565 Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 || || || || || || ||||| || | || |||| | ||||| || || ||| Sbjct 64564 GCAAGATTGCAAACAGCAACCTCATCAGGGGCAGTGTACTCGACAATCTCCGTGCACAGG 64505 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||| || ||| || |||| || || || || ||| || ||| ||| |||||| Sbjct 64504 TTGGAGCTACGGATAGTGCCCAAGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCTTG 64445 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 |||||||||||||| ||||| || ||| || | || || || ||| || | | Sbjct 64444 TAGAGCATAAAGGGGTTACCAGTTTCGGTCTGGGCTTCGAGGATGGCGTACCACAGCT-T 64386 Query 221894 CTGG-CGCTCACCGTCCTCTTGACTGCACCCTCGGTCT---TTTCATACCCG--GTATAG 221947 |||| ||| || || || || || ||| | ||| | || || | ||| || Sbjct 64385 CTGGGCGCGGACAGT----TTCACGGC--CCTTGTTCTGCTTCTCGTAGCTCTCGTACAG 64332 Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007 ||| | |||||| |||||||| | || | ||||| || ||| | ||| ||||| Sbjct 64331 AGCCT--CAAACTCATCACCGTAGACGTCAGCGAGGCCGGGGCACTCGTTGGGGCACATG 64274 Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067 ||| |||| | | ||| || | ||| | || |||||| || || ||||||||||| || Sbjct 64273 AGAGTCCACTCCCCGTTCTCCTGGACACGCTTCATGAACAGATCGGGGATCCACAGAGCG 64214 Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127 | || ||||| | || || |||||| ||||| ||| || | ||||| | || Sbjct 64213 TAGAACAGATCACGGGCGCGAACCTCCTCTTTGCCGTGGTTCTTGCGGAGATCAAGGAAG 64154 Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187 |||| | || |||||||| ||||| || || | ||| | ||| ||||| ||||||||| Sbjct 64153 CCAAAGACATCGGCGTGCCATGGCTCAAGGTAAATGGCAAAAGCACCGGGGCGCTTGTTG 64094 Query 222188 CCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCC 222246 |||||||| || | | | ||| | |||| | | || || | || | || || Sbjct 64093 CCACCCTGGTCGA-CGTAGCGAGCAGTGTTGTTGTACACACGGAGCATAGGAATGAGACC 64035 Query 222247 GTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGA 222306 ||| ||| ||||||||||| |||||| | || || | | || || || Sbjct 64034 GTTTGATGTTCCGTTGGTGCCACCAATGTATGAGCCAGTAGCACGAA--TT--CGGTGGA 63979 Query 222307 C----ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCA 222362 | | || ||||| || ||| || ||||||| ||| ||| ||||||| || || Sbjct 63978 CGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAGGTCTTGAGTGTATCGT 63919 Query 222363 TGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATT 222422 ||| || || || ||||||||| | | | || || || || |||||||||| Sbjct 63918 AGATACCGTCAATGCTGTCCTCCTTCATATCGATGAGGAAGCATGAAGACATCTGAGGCG 63859 Query 222423 TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCA 222482 || | | || || ||||| || || ||||||||| ||||| ||||| Sbjct 63858 AGGGAGTGCCTGCATTGAACAGTGTCGGTGAGGCGTGTGTGAAGTATTTTTGTGACATGT 63799 Query 222483 GATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCA 222542 || || ||||| | | | | | |||| || |||||||| | ||| | || Sbjct 63798 AGTCATAGGTCTCAATGGCCTTCTCAATGTCCTCGCCGTGAATACCAACAGCGACACGCA 63739 Query 222543 TGTACATGTACTGGGGCCTCTCCACAGGACCCTTG-GAGC--TGGAGAGCAGGTACGATT 222599 || ||||| || || | || ||| | ||||| | | || ||| ||||| || Sbjct 63738 TGAGCATGTGTTGCGGACGCT---CAGCAACCTTGCCATCTATGCGGAGGAGGTATGAAC 63682 Query 222600 TTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGG 222659 || || |||||||| |||||| | | | || ||||||| | ||| || | || | Sbjct 63681 GCTCAAGCGTCTTGAAGCCAAAGAATTGGTAGTTGAAGTCTCGGTCGTACACTATAGCCG 63622 Query 222660 CGTCCAGCTCC 222670 || |||||| Sbjct 63621 AGTTGAGCTCC 63611 >seq1363 Length=52244 Score = 158 bits (174), Expect = 2e-33 Identities = 316/469 (67%), Gaps = 15/469 (3%) Strand=Plus/Plus Query 25859 AGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCA 25918 ||| | | || |||| | | || || || || || ||||| || ||||| ||||| |||| Sbjct 38426 AGAACTCCACCTTTGCCAACCGTCTCGTTGCATTCGCTGCCGTCGAGGGTATCTTCTTCA 38485 Query 25919 GCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACT 25978 | || || ||||| ||||||||||||||||| || || ||||| || || |||| Sbjct 38486 GTGGATCATTTGCATCCATCTTCTGGCTCAAGAAGCGTGGTCTGATGCCTGGTCT-TACT 38544 Query 25979 TT-TCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTC 26037 || ||||||||||||||| | |||||||| | |||| || || |||||||||||| Sbjct 38545 TTCTCCAACGAGCTCATCTCTCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTGCTC 38604 Query 26038 TACACGGGCCACTTGCTC--CACAAACCTTCTCAA-GAGACCGTCTACAGTATCATCAAA 26094 | | | ||| ||| ||| || ||| ||| | ||| | ||||||| Sbjct 38605 TTC-----TCTCTT-CTCAACACCCGCCCCAGCAAGGAGTCTGTCCAGGCCATCATCACC 38658 Query 26095 GAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGC 26154 |||||||| | || ||| | ||||| | | ||| Sbjct 38659 GAGGCTGTTGCCATTGAGCAAGAGTTCCTTAGCGACGCCCTGCCATGCGCTTTGCTCGGC 38718 Query 26155 ATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAG 26214 |||||| || |||||| |||| |||||||||| || || |||| |||||| | Sbjct 38719 ATGAACGCCAAGCTCATGTGCCAGTACATTGAGTTCGTTGCTGACCGTCTGCTTCTCGCT 38778 Query 26215 CTGGGACTCGCCAGACTCTACAGTACGC--CTAACCCGTTCGACTTTATGGAAAACATAT 26272 ||||| | ||| ||||| |||| | ||||| |||||||| ||||| ||||| | Sbjct 38779 CTGGGCAACACCAAGGTCTAC--CACGCCACGAACCCCTTCGACTTCATGGAGAACATCT 38836 Query 26273 CGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 || | | || |||||||||||||| || ||| | ||||| ||||| || Sbjct 38837 CGCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCA 38885 Score = 104 bits (114), Expect = 4e-17 Identities = 181/258 (70%), Gaps = 9/258 (3%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| | |||||||||||||| | || ||||||||| ||||| || ||||| || Sbjct 37996 TGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCTGAAGAAATCGATCTCTCC 38055 Query 25540 AAGGACATGGACGGCTGGTAC--GC-TCTATCCAAAGACGAGCA--GCATTTTC-TCAAG 25593 ||||| | ||| |||| || || ||| ||| ||||| | || | ||| || Sbjct 38056 AAGGATCTCCACGACTGGAACAAGCGTCT---CAATGACGACGAACGCTTCTTCATCTCC 38112 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| |||||||| ||||| || || |||||||| ||| |||| | Sbjct 38113 CACGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATCGTCAACGAGAACCTGGTCGAGCGT 38172 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 ||| | || ||||| || | ||||| || |||||||| |||||||| || Sbjct 38173 TTCTCGAGCGAAGTACAAATCCCTGAGGCACGATGCTTCTACGGCTTCCAGATCATGATG 38232 Query 25714 GAAAATGTGCACTCTGAG 25731 || ||||| ||||||||| Sbjct 38233 GAGAATGTCCACTCTGAG 38250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928825758681600