Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1500 105 4e-17 >seq1500 Length=44508 Score = 105 bits (116), Expect = 4e-17 Identities = 131/177 (74%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||| || || || ||| || ||||||||||| |||||||| || ||||| || Sbjct 4736 TTGTAATCGGCAAGCGTCCTGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGCTGC 4795 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC- 480712 || |||||||| || || |||||||| |||||||| || || ||||| ||||| Sbjct 4796 TGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTTACGTTGTCAATGGTATCG 4855 Query 480713 AGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | | | ||| ||||| || || |||||||||||||| ||||| ||||| Sbjct 4856 CTTGATTCCACCTCCAA-AGTAATCGTCTTGCCGGTGAGAGTCTTGACGAAGATTTG 4911 Score = 104 bits (114), Expect = 2e-16 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || | |||||||| || || | ||| || || || ||||| Sbjct 4921 ACGCAGACGGAGCACCAAGTGAAGTGTCGACTCCTTCTGGATATTGTAGTCGGCAAGAGT 4980 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| | ||||| || ||||| || |||||||| || || |||||||| || Sbjct 4981 ACGGCCATCTTCCAACTGCTTGCCCGCAAAGATGAGACGTTGCTGGTCTGGAGGAATACC 5040 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||||||| ||||||||| ||||| ||||||||||| Sbjct 5041 TTCCTTGTCCTGAATCTTTGCCTTGACGTTGTCAATAGTATC 5082 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || ||||| || ||| || || || || || || || || || Sbjct 5149 ACGCAGACGGAGGACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGT 5208 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | || |||||||||||||| || ||||| ||||| || || || || ||||| || Sbjct 5209 TCGGCCGTCCTCAAGTTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCC 5268 Query 480671 TTCCTTGTCTTGAATCTT 480688 |||||||| || ||||| Sbjct 5269 CTCCTTGTCCTGGATCTT 5286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268108852442720