Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq956 131 5e-25 seq50 125 2e-23 seq1513 111 5e-19 seq1363 98.7 3e-15 >seq956 Length=78424 Score = 131 bits (144), Expect = 5e-25 Identities = 389/589 (66%), Gaps = 16/589 (3%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || ||||| || | | || || |||||| |||| || ||||| || | | || || Sbjct 35292 ATCAGACCGCAAATGTCGCATACGTGGACGGTGTATGCGTCAGAGACGGTAAAGAGACGT 35233 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 ||||| |||| || |||||||| | ||||||||||||||| ||||| || |||||| Sbjct 35232 TCCTTGAGGAAGGCAGCGGCACCGTGGGCAATCATACAATCACGTTCCATCTCTCCGAAA 35173 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 || ||||||||||| | || | ||| ||| | ||||| || |||||| | | || Sbjct 35172 CGGAGACCACCATCTCTGGCACGACCTTCGACGGGCTGGCGGGTGAGAATCTGGAGGGGG 35113 Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646 ||| || || || ||| || | ||||| || ||||||||||||| ||| | Sbjct 35112 CCGCGGGCACGAGCGTGGATCTTGTCGTCGACCATGTGGCGGAGACGCTGGTAGTATGTG 35053 Query 251647 GGACCGATGAAGATGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCG 251706 ||||| | |||||| || | ||| | | ||||| || |||| ||||| | ||| Sbjct 35052 GGACCCAAGAAGATTTGCGTACGCAACTTTTTACCAGTGTGACCGTTGTACATGATTTCA 34993 Query 251707 TTTCCATTAGATTC--ATAACC-AAGT-TTC-TGTAGCTCTGAAGCAATATCACCAATCT 251761 ||| | ||| || || || ||| | |||| || || | | | | | Sbjct 34992 AACCCA--CGCTTCTGGTAGCCGGCGTCTTCGAGCAGCTGGGA---GATTTGATCGACCG 34938 Query 251762 TGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCAT--TTGAATCAACACTTTGCC 251819 ||| | | | || ||| |||| || | | || | | | | | || ||| Sbjct 34937 TGACGTCGGTGAAGGGTGTGGCGTCACCCTCTTGTCCGGTGATGGCACC--GACCTTGGA 34880 Query 251820 TAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGAT 251879 || || || || ||||| || ||||||||| || || || || || ||||| Sbjct 34879 TAGCAGACATTCGACCAAATGGGCAATTGTCATACGAGAAGGGATGGCGTGAGGGTTGAT 34820 Query 251880 GATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGT 251938 ||| | || ||| ||| ||| || ||| || |||||||||| || | || || Sbjct 34819 GATTAGATCTGGTGTCACTCCCTCTCGAGTAAAAGGCATATCCTCTT-GGCGGTAGGTGA 34761 Query 251939 TTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 | |||||||| |||||||| |||||||||||| ||||| |||||||| Sbjct 34760 TACCAATAGTACCCTTTTGACCGTGACGAGAAGCAAACTTGTCACCAAT 34712 >seq50 Length=66349 Score = 125 bits (138), Expect = 2e-23 Identities = 584/924 (63%), Gaps = 16/924 (2%) Strand=Plus/Minus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCAC 155646 ||| ||| || ||||| || || ||| ||| | | | |||| || |||||||| Sbjct 64572 CAAGAGAAGCAAGATTGCAAACAGCAACCTCATCAGGGGCAGTGTACTCGACAATCTCCG 64513 Query 155647 AGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAG 155706 ||||||||| || || ||| ||||| || ||||||||||| |||| ||| |||| Sbjct 64512 TGCACAGGTTGGAGCTACGGATAGTGCCCAAGTTCTTCTGGTTGCTCTTACGGTTGCAAG 64453 Query 155707 CATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT------CT 155760 |||||||||| || || | ||| | || || || |||| || || || || | Sbjct 64452 CATCCTTGTAGAGCATAAAGGGGTTACCAGTTTCGGTCTGGGCTTCGAGGATGGCGTACC 64393 Query 155761 TTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCA 155820 ||| || | ||| || | | |||| ||||| | ||| || || Sbjct 64392 ACAGCTTCTGGGCGCGGACAGTTTCACGGCCCTTGT-TCTGCTT-----CTCGTAGCTCT 64339 Query 155821 TATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGC 155880 ||||| | | || |||||||| ||| || || ||||||| | ||||| Sbjct 64338 CGTACAGAGCCTCAAACTCATCACCGTAGACGTCAGCGAGGCCGGGGCACTCGTTGGGGC 64279 Query 155881 AAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAA 155940 | | || | ||| || | ||||||| ||| || | ||| ||| | Sbjct 64278 ACATGAGAGTCCACTCCCCGTTCTCCTGGACACGCTTCATGAACAGATCGGGGATCCACA 64219 Query 155941 TAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTA 156000 ||| ||||| || || | || |||||| | |||||| ||||| || || || | Sbjct 64218 GAGCGTAGAACAGATCACGGGCGCGAACCTCCTCTTTGCCGTGGTTCTTGCGGAGATCAA 64159 Query 156001 AGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACC---ATTCC 156057 ||| | | ||| | || |||||| || || || |||||| ||| | Sbjct 64158 GGAAGCCAAAGACATCGGCGTGCCATGGCTCAAGGTAAATGGCAAAAGCACCGGGGCGCT 64099 Query 156058 TCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAA 156117 | ||||||||||| || || || |||||||| || ||| | |||| ||||||||||| | Sbjct 64098 TGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGTACACACGGAGCATAGGAATGA 64039 Query 156118 TACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAA 156177 ||| || || || || ||||| || | ||| | || |||| | |||| || | Sbjct 64038 GACCGTTTGATGTTCCGTTGGTGCCACCAATGTATGAGCCAGTAGCACGAATTCGGTGGA 63979 Query 156178 TATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGA 156237 | || |||||||| || | || || || || || ||| | |||| | Sbjct 63978 CGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAGGTCTTGAGTGTATCGT 63919 Query 156238 AAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTC 156297 | ||||| ||||| || || | ||| | || |||| ||| | ||||| Sbjct 63918 AGATACCGTCAATGCTGTCCTCCTTCATATCGATGAGGAAGCATGAAGACATCTGAGGCG 63859 Query 156298 GTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATAT 156357 || || || || ||||| ||||| |||| || || | || || || | ||||| | Sbjct 63858 AGGGAGTGCCTGCATTGAACAGTGTCGGTGAGGCGTGTGTGAAGTATTTTTGTGACATGT 63799 Query 156358 AATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCA 156417 | || || ||||| | |||||||| | |||||||||| | || ||| | || Sbjct 63798 AGTCATAGGTCTCAATGGCCTTCTCAATGTCCTCGCCGTGAATACCAACAGCGACACGCA 63739 Query 156418 TCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTT 156477 | ||| || || |||||||| ||| | ||||| || || || ||||||| || | Sbjct 63738 TGAGCATGTGTTGCGGACGCTCAGCAACCTTGCCATCTATGCGGAGGAGGTATGAACGCT 63679 Query 156478 CCAGAGTTTTAAACCCGAAATAAT 156501 | || || || || || ||| ||| Sbjct 63678 CAAGCGTCTTGAAGCC-AAAGAAT 63656 >seq1513 Length=92312 Score = 111 bits (122), Expect = 5e-19 Identities = 178/253 (70%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| | |||||| | ||||| |||||||| ||||||||||| || | || || Sbjct 81666 CATGACGTCTTCGAGGGCCTTGACCAAACGACGTTGAATATAACCTGTCTCGGCCGTCTT 81607 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || |||||||| || | ||| |||||||| |||| || |||||||| | ||| || Sbjct 81606 GACTGCTGTATCGATCAAACCTTCACGACCAGCCATGGCGTGGAAGAAGAACTCAGAAGG 81547 Query 302685 TCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGA 302743 ||| || || | || | ||| |||| ||||||||||| | |||||| || | ||| Sbjct 81546 -CGTAAGACCACGAAGGTATGAGTTCTCGACGAAACCACGAGACTCGGGTGAGTAATCGT 81488 Query 302744 ACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAA 302803 ||| | || ||||||| ||||||| || | ||| | || ||||||| || || | Sbjct 81487 CCTTTGAGAAATGTGGCAACGTCCTGTACTTGAAACCGAACGGAATACGCTGACCCTCCA 81428 Query 302804 CGTTCTGCTGTCC 302816 || ||||| || Sbjct 81427 CGGCTTGCTGACC 81415 >seq1363 Length=52244 Score = 98.7 bits (108), Expect = 3e-15 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 133451 AAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGT 133510 ||||| | ||||||||| | ||||||| |||||| | | ||||| | ||| Sbjct 38389 AAGAAGGCCGACTGGGCTCTGCGATGGATCTCTGACAAGAACTCCACCTTTGCCAACCGT 38448 Query 133511 CTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGC-TCTATTTT 133569 |||||||| || |||| || ||||| || || |||||||| | || ||| || || || Sbjct 38449 CTCGTTGCATTCGCTGCCGTCGAGGGTATCTTCTTCAGTGGATCATT-TGCATCCATCTT 38507 Query 133570 TTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAG 133629 ||||| || ||||||||| | | ||||| || ||| || ||||| || || || | Sbjct 38508 CTGGCTCAAGAAGCGTGGTCTGATGCCTGGTCTTACTTTCTCCAACGAGCTCATCTCTCG 38567 Query 133630 GGACGAGGCACTTCACACCGAATTTGCC 133657 ||||||| | |||||||| || ||| Sbjct 38568 TGACGAGGGCATGCACACCGACTTCGCC 38595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471786673432680