Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq290 154 2e-31 seq1218 145 9e-29 seq1363 120 4e-21 seq50 96.9 4e-14 seq1324 87.8 2e-11 seq1229 86.0 8e-11 >seq290 Length=78842 Score = 154 bits (170), Expect = 2e-31 Identities = 109/125 (87%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 ||||||||| | |||||||||||||||||||||||||||||| | || |||||| |||| Sbjct 77218 CTCTTTGAGATCATCCTCGCCGCCAACTACCTCGACATCAAGGCCCTCCTCGATGTTGGC 77277 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 ||||| | || ||||||||||||||||| ||||||||||| |||||||| ||||| || Sbjct 77278 TGCAAAACAGTCGCCAACATGATCAAGGGAAAGTCGCCCGACGAGATCCGTAAGACGTTC 77337 Query 1592288 AACAT 1592292 ||||| Sbjct 77338 AACAT 77342 >seq1218 Length=16324 Score = 145 bits (160), Expect = 9e-29 Identities = 221/315 (70%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 1573947 CTCTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGC 1574006 ||| | |||| ||| | | || ||||| ||||| |||||||| || |||||||||||| Sbjct 11358 CTCCTCGGCGACGCCTACAAAGAAGCCGTCCTCGAGCTCAACGCCTCCGACGAGCGCGGC 11299 Query 1574007 GTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCC 1574066 |||||||||| ||||| ||||||| | |||| || | || ||||| ||| Sbjct 11298 ATCGACGTCGTCCGCAACCGCATCAAGGGCTTCGCCCAGAAAAAAGTCACACTGCCCCCC 11239 Query 1574067 GGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAG 1574126 || | || ||| | ||||||||||||| || ||| || | || | ||||| ||| Sbjct 11238 GGCAGACAAAAGCTAGTCATCCTCGACGAAGCAGACAGCATGACAAGCGGTGCCCAACAG 11179 Query 1574127 GCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAAC 1574186 || || || ||||||||||| ||| | || || ||||| ||| | || |||||| Sbjct 11178 GCACTCCGCCGCACCATGGAAATCTACAGCGCAACCACCCGCTTCGCCTTCGCCTGCAAC 11119 Query 1574187 ACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTTTGTGCGC 1574246 ||| | | |||||||| ||||||| ||||||||||| || |||| | ||| Sbjct 11118 CAGTCAAACAAGATCATCGAGCCCCTCCAGTCCCGCTGCGCCATCCTCCGCTACGCCCGC 11059 Query 1574247 CTGGGTGACGCCCAG 1574261 || ||||| ||| Sbjct 11058 CTCACAGACGCACAG 11044 >seq1363 Length=52244 Score = 120 bits (132), Expect = 4e-21 Identities = 220/316 (70%), Gaps = 6/316 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| |||||||||||||| | |||||||| Sbjct 38891 GCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGCGAGATG 38832 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||| | | | |||| ||| | || || | || | Sbjct 38831 TTCTCCATGAAGTCGAAGGGGTTCGTGGCGTGGTAGACCTTGGTGTTGCCCAGAG-CGAG 38773 Query 868811 A-GCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 | |||| ||||| || || ||||| ||||||||||||||||| |||||||||||||| Sbjct 38772 AAGCAGACGGTCAGCAACGAACTCAATGTACTGGCACATGAGCTTGGCGTTCATGCCGAG 38713 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 | || ||||| | ||||| | ||||||| ||| || | || |||||| ||| Sbjct 38712 CAAAGCGCATGGCAGGGCGTCGCTAAGGAACTCTTGCTCAATGGCAACAGCCTCGGTGAT 38653 Query 868930 GATCTGCCTGGGC--ACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 ||| |||||| | || | | |||| | || ||| | | | ||||||||||| Sbjct 38652 GAT-GGCCTGGACAGACTCCTTGCTGGGGC-GGGTGTTGAGAAGAGAGAAGAGCAGGCAG 38595 Query 868988 GCAAAGTCGCAGTGCA 869003 || |||||| ||||| Sbjct 38594 GCGAAGTCGGTGTGCA 38579 Score = 109 bits (120), Expect = 7e-18 Identities = 180/259 (69%), Gaps = 7/259 (3%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||| ||||| || ||||||||||||||| ||| | |||| | | ||| Sbjct 38246 GAGTGGACATTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCAGGGATTTGT 38187 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || || ||| || || ||||||||||| |||||||| ||| ||| ||||| Sbjct 38186 ACTTCGCTCGAGAAACGCTCGACCAGGTTCTCGTTGACGATGCCATCGGAGGCTGCGAAG 38127 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACAC-----CCAGT 869807 || || |||||||| ||| ||| ||| |||||||| |||| || | ||||| Sbjct 38126 AAGGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTCATTGAG--ACGCTTGTTCCAGT 38069 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 | | || | ||| || | || || |||||||||| || ||||||||||| | Sbjct 38068 CGTGGAGATCCTTGGAGAGATCGATTTCTTCAGCGGTCCAGAAAGAAGCCTCGGCCTTCT 38009 Query 869868 TGTACATCTCCCATACTTG 869886 ||||||| | ||| || || Sbjct 38008 TGTACATTTGCCAGACCTG 37990 >seq50 Length=66349 Score = 96.9 bits (106), Expect = 4e-14 Identities = 176/258 (68%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||||||||| || |||| ||| | || |||||||| || | ||| ||||| || Sbjct 64088 CTGGTCGACGTAGCGAGCAGTGTTGTTGTACACACGGAGCATAGGAATGAGACCGTTTGA 64029 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||||| | | ||| | ||| | || || | ||| || | || Sbjct 64028 TGTTCCGTTGGTGCCACCAATGTATGAGCCAGTAGCACGAATTCGGTGGACGTTGAGACC 63969 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || ||||| || | ||||||||| | || || ||||| || |||||||| || || Sbjct 63968 AATACCGCCAGCGGTCTTGGAGATCAAGGCACAGGTCTTGAGTGTATCGTAGATACCGTC 63909 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| ||||||| || | ||| ||||| || || | || || | ||||| Sbjct 63908 AATGCTGTCCTCCTTCATATCGATGAGGAAGCATGAAGACATCTGAGGCGAGGGAGTGCC 63849 Query 1630305 GGCGTTGAAGAGCGTGGG 1630322 || ||||| || || || Sbjct 63848 TGCATTGAACAGTGTCGG 63831 >seq1324 Length=212985 Score = 87.8 bits (96), Expect = 2e-11 Identities = 112/154 (73%), Gaps = 8/154 (5%) Strand=Plus/Minus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTC----GCAACGTGCCGGCAGGCCTC 19100 ||||||| || || ||||| ||| || |||||| | ||| || |||| || Sbjct 119564 AGGACAGTATTGGTGGCACAGTG----GCCTGTGTCATCAGGAACTGCCCAACAGGTCTG 119509 Query 19101 GGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCG 19160 || ||||| |||||||||||| | ||||| ||| | ||||||||||||||||| || Sbjct 119508 GGGGAGCCATGCTTTGACAAGCTTGAGGCAAAGCTGGGGCACGCCATGCTGTCGATTCCA 119449 Query 19161 GCCACCAAGGGATTCGAGATTGGCAGCGGGTTTG 19194 || || ||||| || || ||||| ||||||| Sbjct 119448 GCGACTAAGGGGTTTGAAATTGGATCTGGGTTTG 119415 >seq1229 Length=74557 Score = 86.0 bits (94), Expect = 8e-11 Identities = 144/206 (70%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 1852046 ATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCCGGCACGAGC 1852105 ||||||||| | | ||| ||||||||||| || | || | || || || || | Sbjct 10237 ATCTTGGAGTCTGGGTCGGAAGCGCTCATCTTTCCAC-CTTGCAGA--CCTGGGACCATA 10181 Query 1852106 GGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGTCGCGCGCAAAG 1852165 ||||| | || |||| ||||| | ||||| | || || ||| || | Sbjct 10180 GGGTTCATCAAGTGGGCGCGCTCCTTGTAGCCAATCTTGGGTAGCACGTCCTTTGCGAGT 10121 Query 1852166 GCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCG 1852225 ||||| ||||| || ||||| ||||||||||| |||| |||||||||| || ||| Sbjct 10120 GCAAAGATCTTACGTTGGTCTACACCGCCAAACTGTACGTCTACGTCGAGGTACTCCTCA 10061 Query 1852226 TCGAGGGCCTGCATGAGCGGGTAGAG 1852251 ||||| || |||||||| |||||||| Sbjct 10060 TCGAGAGCTTGCATGAGAGGGTAGAG 10035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107004613919880