Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq50 197 1e-45 seq1500 98.7 9e-16 >seq50 Length=66349 Score = 197 bits (218), Expect = 1e-45 Identities = 976/1530 (64%), Gaps = 68/1530 (4%) Strand=Plus/Minus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| || ||||| || | || || ||| ||| ||||| ||| | ||||| || Sbjct 65134 ACCTGGAACTCACCCGCGAGCACACGTCGAGAGTAGATGTTAGATGTGTACGGCTCGAAG 65075 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 ||||||||||||| |||||||| | || | || || |||||| || | ||| | | Sbjct 65074 CATTCGTTGTTTCCGAGAATCTGGGAGGTCGAGGCAGTTGGCATGGGAGCGATCAACAAA 65015 Query 138628 GAATTCCGTAAACC--GTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAAT 138685 || || |||| ||| || ||| || | |||| | | | ||||||||| | | Sbjct 65014 GAGTTGCGTACACCATGTTGAGCAATCTTGG--CCTTCAACTCTGCCCAGTCCCAGAGGT 64957 Query 138686 CGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTT 138745 || | || | |||||||||||||||||| | ||||| | ||||| || | Sbjct 64956 CGGTGGGGGTGACGTTCCACATATCGTACTGAAGGGTTCCCTGAGAAACGGGAGATCCCT 64897 Query 138746 CGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCAT 138805 |||| | || ||| ||||| ||| | || | ||| | | || ||| | | Sbjct 64896 CGTAGGTCTCATATGGACCAAGCTCCTTGGCAATGTCGCAGGAAGAAGTAAGAGCAGCGT 64837 Query 138806 AGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCA 138865 ||| || || ||| ||||| |||||| |||||| || |||| | |||| Sbjct 64836 GGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCTGCCGACTCGAAAGGCA 64777 Query 138866 TGCGGAGCAT-CG-TGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATG 138923 ||| | || || ||| || |||||||| ||||| ||||||| |||| ||| || || Sbjct 64776 GGCGCA--ATGCGAGGAAAGCATCGGCCAGACCTTGTACGCCCATACCGATAGGTCGGTG 64719 Query 138924 GCGCAGATTTGACGC-TTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGT 138982 || | | ||| || ||| | || | || || | ||| || || ||||| |||| Sbjct 64718 ACGGA-AGTTGCTGCGGCGTGCCTCCTCAACGGGGTAGTGGTTGACTTCAATGATCTTGT 64660 Query 138983 TTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGCCC 139041 | || || || ||| |||| || | | | || | | | || || | ||| Sbjct 64659 TCAAGTTGCGGGTGACAACCTGGGT-GACCTCGTGAAGCTTCTGGAAGTCAAACTCGCCA 64601 Query 139042 CCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACC 139101 | |||| ||| ||||| | | || || || | ||||| || Sbjct 64600 CGCTTGT---------AGTCAACAAAAGAGGGCAGGGCAAGAGAAGCAAGATTGCAAACA 64550 Query 139102 GCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATT---ACTACACTTG 139158 || || || || ||| | |||| |||||||| || | |||| || |||| | Sbjct 64549 GCAACCTCATCAGGGGCAGTGTACTCGACAATCTCCGTGCACAGGTTGGAGCTAC---GG 64493 Query 139159 ATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATAC 139218 || || || || || | || ||||| || ||||| |||||||| ||||| |||||| | Sbjct 64492 ATAGTGCCCAAGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCTTGTAGAGCATAAAG 64433 Query 139219 GGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTA-- 139276 || | |||||||| || | || | ||| | ||| | | || | | Sbjct 64432 GGGTTACCAGTTTCGGTCTGGGCTTCGAGGATGGCGTACCACAGCTTCTGGGCGCGGACA 64373 Query 139277 -TTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCA 139335 ||| ||| | | |||| | |||||| | ||||| || | || || ||| Sbjct 64372 GTTTCACGGCCCT--TGTTC-TGCTTCTCGTAGCTCTCGTACAGAGCCTCAAACTCATCA 64316 Query 139336 CCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTC 139395 |||||| |||||| || || | |||| || || |||||||| | ||| | |||||| Sbjct 64315 CCGTAGACGTCAGCGAGGCCGGGGCACTCGTTGGGGCACATGAGAGTCCACTCCCCGTTC 64256 Query 139396 GCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATC----GCG 139451 ||| ||| ||| ||||||||||||| || ||||||| |||| | | || ||| ||| Sbjct 64255 TCCTGGACACGCTTCATGAACAGATCGGGGATCCACAGAGCGTAGAACAGATCACGGGCG 64196 Query 139452 CG-CCTTCTTATCTTCCGAACCCATGTTACGTTTC--ATGTTAAGGAAATCAAAAACGTC 139508 || | || | | | ||| || | | || | | | |||||| |||| || || Sbjct 64195 CGAACCTCCTCTTTGCCG------TGGTTC-TTGCGGAGATCAAGGAAGCCAAAGACATC 64143 Query 139509 AGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG---TTTGCCACCTTGATC 139565 ||||||||||| || || || ||||| | || || || |||||||| || || Sbjct 64142 GGCGTGCCATGGCTCAAGGTAAATGGCAAAAGCACCGGGGCGCTTGTTGCCACCCTGGTC 64083 Query 139566 GACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCC 139625 ||||| || ||| || ||| | || || | ||| || |||||| | | |||||| Sbjct 64082 GACGTAGCGAGCAGTGTTGTTGTACACACGGAGCATAGGAATGAGACCGTTTGATGTTCC 64023 Query 139626 GTTGGTGCTAC----GGATGGGACTGTTG--CGAGCTCGGACGTCATGTACATTGATGCC 139679 |||||||| || | ||| | | || | ||| |||| || || |||| || Sbjct 64022 GTTGGTGCCACCAATGTATGAGCCAGTAGCACGAATTCGG------TGGACGTTGAGACC 63969 Query 139680 GATTCCGCCGCCAAATTTGGATATTAAAACGCA-ATCGCGTAATGTCTCGTATATACCTC 139738 || ||||| | ||||| || || | || || | | ||| ||||| ||||| Sbjct 63968 AATACCGCCAGCGGTCTTGGAGATCAAGGCACAGGTCTTG-AGTGTATCGTAGATACCGT 63910 Query 139739 TTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGC 139798 |||||||| |||| ||| || || |||||||| || | || || |||| Sbjct 63909 CAATGCTGTCCTCCTTCATATCGATGAGGAAGCATGAAGACATCTGAGGCGAGGGAGTGC 63850 Query 139799 CGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACG 139858 | || ||||| || || ||||| ||||| || || ||||| | || || | Sbjct 63849 CTGCATTGAACAGTGTCGGTGAGGCGTGTGTGAAGTATTTTTGTGACATGTAGTCATAGG 63790 Query 139859 TTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATAT 139918 | || ||||| || |||| ||| ||||| ||||| |||| ||| ||||| ||||| | Sbjct 63789 TCTCAATGGCCTTCTCAATGTCCTCGCCGTGAATACCAACAGCGACACGCATGAGCATGT 63730 Query 139919 GTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAG--ATAACCGTTCTCTAGGGT 139976 |||| || || || ||| ||| || || || || | || ||| || || Sbjct 63729 GTTGCGGACGCTCAGCAACCTTGCCATCTATGCGGAGGAGGTATGAACG--CTCAAGCGT 63672 Query 139977 CTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 |||| |||||||| | |||||||| || Sbjct 63671 CTTGAAGCCAAAGAATTGGTAGTTGAAGTC 63642 >seq1500 Length=44508 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || ||||| || || || | | Sbjct 5142 ATGCAGATCTTCGTCAAGACACTGACTGGAAAGACCATCACGCTGGAGGTCGAGTCTTCG 5083 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||| || ||||| ||||| || ||||| || || Sbjct 5082 GATACTATTGACAACGTCAAGGCAAAGATTCAGGACAAGGAAGGTATTCCTCCAGACCAG 5023 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | |||||||| || || ||| |||| ||| | | | | || || || Sbjct 5022 CAACGTCTCATCTTTGCGGGCAAGCAGTTGGAAGATGGCCGTACTCTTGCCGACTACAAT 4963 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| |||||||| ||||||||| | || |||| || || Sbjct 4962 ATCCAGAAGGAGTCGACACTTCACTTGGTGCTCCGTCTGCGTGGTGG 4916 Score = 86.0 bits (94), Expect = 6e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 ||||| || || || || ||||| || || || ||||||| | || | || || Sbjct 5630 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACCATCGACAATGTCAAGGCG 5571 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| || ||||| || || || || || || || || ||||||||||| ||||| || Sbjct 5570 AAGATTCAGGACAAGGAGGGCATCCCACCAGACCAGCAGCGTTTGATCTTCGCCGGCAAG 5511 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| | | | | | || || |||||||| |||||||| || || ||| Sbjct 5510 CAGCTTGAGGACGGCCGCACCCTTGCCGACTACAACATTCAGAAGGAATCCACCCTCCAC 5451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449888377099200