Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1218 168 1e-35 seq290 158 2e-32 seq1363 131 3e-24 seq1229 113 7e-19 seq1263 89.7 8e-12 seq50 87.8 3e-11 >seq1218 Length=16324 Score = 168 bits (186), Expect = 1e-35 Identities = 330/484 (68%), Gaps = 3/484 (1%) Strand=Plus/Minus Query 2018925 GAAAAGTACCG-CCCGACAGTGCTCGACGACATCGTGGGCAACGAGCACGCCGTTGCCTA 2018983 ||||||||||| |||| | |||||||| |||| |||||| | || ||| Sbjct 11517 GAAAAGTACCGTCCCGTCTAC-CTCGACGATGTCGTCGGCAACACCGAGACCATTGAGCG 11459 Query 2018984 CCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAACCTCTTGCTGGCGGGCCCGCCCGG 2019043 ||||||| | || || ||||||||||| || | | | | ||| ||| || Sbjct 11458 CCTCAAGATCATTGCAAAGGATGGCAACATGCCACACATGATCATATCCGGCATGCCAGG 11399 Query 2019044 CACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGCGCGGCCGCCGA 2019103 | ||||| || || |||| ||||| || ||| ||| | |||| ||| | | Sbjct 11398 TATCGGCAAAACAACCTCCATCCTCTGCCTCGCCCGCCAACTCCTCGGCGACGCCTACAA 11339 Query 2019104 CGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAAT 2019163 || ||||| ||||| ||||| || || |||||||||||| | |||||||| || | Sbjct 11338 AGAAGCCGTCCTCGAGCTCAACGCCTCCGACGAGCGCGGCATCGACGTCGTCCGCAACCG 11279 Query 2019164 CATCAAGCATCACGCTTCGAAAAGAATCGACCTGCCGCCCGGCCGCCACAAGGTGATCAT 2019223 ||||||| ||| ||||| | || ||||| |||||| | || ||| | |||| Sbjct 11278 CATCAAGGGCTTCGCCCAGAAAAAAGTCACACTGCCCCCCGGCAGACAAAAGCTAGTCAT 11219 Query 2019224 CCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGA 2019283 |||||| || || ||| || | || | ||||| ||||| ||||| |||||||| Sbjct 11218 CCTCGACGAAGCAGACAGCATGACAAGCGGTGCCCAACAGGCACTCCGCCGCACCATGGA 11159 Query 2019284 AAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGA 2019343 || |||| | || || || || || | ||||||||| ||| | | ||||||| Sbjct 11158 AATCTACAGCGCAACCACCCGCTTCGCCTTCGCCTGCAACCAGTCAAACAAGATCATCGA 11099 Query 2019344 AGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCAGATCG- 2019402 |||||||| ||| ||||||||| | |||| || |||||||| ||||| ||| ||| Sbjct 11098 GCCCCTCCAGTCCCGCTGCGCCATCCTCCGCTACGCCCGCCTCACAGACGCACAGGTCGT 11039 Query 2019403 CCGC 2019406 |||| Sbjct 11038 CCGC 11035 >seq290 Length=78842 Score = 158 bits (174), Expect = 2e-32 Identities = 120/142 (85%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671 ||||||||||| | ||||||||| | |||||||||||||||||||||||||||||| Sbjct 77201 AGGTCGACCAAGAGATGCTCTTTGAGATCATCCTCGCCGCCAACTACCTCGACATCAAGG 77260 Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731 ||||||||||| | || ||||| || || |||||| | |||||||| ||||||||||| | Sbjct 77261 CCCTCCTCGATGTTGGCTGCAAAACAGTCGCCAACATGATCAAGGGAAAGTCGCCCGACG 77320 Query 2035732 ACATCCGCAAGACCTTTAACAT 2035753 | ||||| ||||| || ||||| Sbjct 77321 AGATCCGTAAGACGTTCAACAT 77342 >seq1363 Length=52244 Score = 131 bits (144), Expect = 3e-24 Identities = 190/264 (72%), Gaps = 7/264 (3%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || || ||| |||||| |||||||||||||| | | Sbjct 38899 TGACACCAGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCAA 38840 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTC---TCGCACC 794007 ||||||| |||||| | ||| ||||| | | ||||| ||| | || || Sbjct 38839 GCGAGATGTTCTCCATGAAGTCGAAGGGGTTCGTGGCGTGGTAGACCTTGGTGTTGC-CC 38781 Query 794008 CGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGT 794067 |||||| |||||| ||||| || ||||| |||||||||||||||||||| ||||| Sbjct 38780 AGAGCGAG--AAGCAGACGGTCAGCAACGAACTCAATGTACTGGCACATGAGCTTGGCGT 38723 Query 794068 TCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGG 794127 ||||||||| | || ||||| | ||||| | ||||||| ||| || | || | Sbjct 38722 TCATGCCGAGCAAAGCGCATGGCAGGGCGTCGCTAAGGAACTCTTGCTCAATGGCAACAG 38663 Query 794128 CCTCGATGATGATCTGCCTGGGCA 794151 ||||| ||||||| |||||| || Sbjct 38662 CCTCGGTGATGAT-GGCCTGGACA 38640 >seq1229 Length=74557 Score = 113 bits (124), Expect = 7e-19 Identities = 200/286 (70%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 2411376 ATCGTCGAGA---TCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGT 2411432 |||||| ||| |||||||||||| | | ||| ||||||||||| || ||||| Sbjct 10253 ATCGTCAAGAACATCAATCTTGGAGTCTGGGTCGGAAGCGCTCATCTTTCCA-CCTTGCA 10195 Query 2411433 GAGGCCCGGCACCAGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAG 2411492 || || || |||| ||||| | || |||| ||||| |||||| | | || || Sbjct 10194 GA--CCTGGGACCATAGGGTTCATCAAGTGGGCGCGCTCCTTGTAGCCAATCTTGGGTAG 10137 Query 2411493 GTGGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGAC 2411552 ||| || | ||||||||||| || ||||| ||||||||||| |||| || Sbjct 10136 CACGTCCTTTGCGAGTGCAAAGATCTTACGTTGGTCTACACCGCCAAACTGTACGTCTAC 10077 Query 2411553 GTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGG 2411612 |||||||| || ||| ||||| || |||||||| ||||||| || ||||| |||| Sbjct 10076 GTCGAGGTACTCCTCATCGAGAGCTTGCATGAGAGGGTAGAGAAGTCCACTGAGTGGCGC 10017 Query 2411613 GTT-GCGGTCCATCTTGACCACCTGGGCGGCGGCCTTTTGCGCCGT 2411657 || | || | ||| || || | ||| | ||||||| ||| || Sbjct 10016 ATTCTCCGT-CTGCTTAACGACTTCGGCACCAGCCTTTTTCGCGGT 9972 >seq1263 Length=168666 Score = 89.7 bits (98), Expect = 8e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||||||||| || ||||||||| |||| ||||| ||| ||| Sbjct 73000 GTACTTGGTGACGGCCTTGGTACCCTCAGATACGGCGTGCTTGGCAAGTTCACCGGGCAG 73059 Query 1485531 GATCAGGCGCAC 1485542 ||||| ||| || Sbjct 73060 GATCAAGCGGAC 73071 >seq50 Length=66349 Score = 87.8 bits (96), Expect = 3e-11 Identities = 174/258 (67%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| ||||| || |||| ||| | || |||||||| || | || ||||| || Sbjct 64088 CTGGTCGACGTAGCGAGCAGTGTTGTTGTACACACGGAGCATAGGAATGAGACCGTTTGA 64029 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||||||||| | | ||| | ||| | || || | ||| || | || Sbjct 64028 TGTTCCGTTGGTGCCACCAATGTATGAGCCAGTAGCACGAATTCGGTGGACGTTGAGACC 63969 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || ||||| || | ||||||||| | || || | || || || |||||||| || || Sbjct 63968 AATACCGCCAGCGGTCTTGGAGATCAAGGCACAGGTCTTGAGTGTATCGTAGATACCGTC 63909 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || ||| ||||||| || | || ||||| || || | || || | ||||| Sbjct 63908 AATGCTGTCCTCCTTCATATCGATGAGGAAGCATGAAGACATCTGAGGCGAGGGAGTGCC 63849 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 |||||||| || || || Sbjct 63848 TGCATTGAACAGTGTCGG 63831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916071945719960