Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1500 104 2e-17 seq400 98.7 6e-16 seq1257 84.2 1e-11 >seq1500 Length=44508 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| || ||||||||| || || ||||| | || | || |||| Sbjct 4931 AGCACCAAGTGAAGTGTCGACTCCTTCTGGATATTGTAGTCGGCAAGAGTACGGCCATCT 4990 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || || ||||| || |||||||||||| | || | || |||||||| Sbjct 4991 TCCAACTGCTTGCCCGCAAAGATGAGACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCC 5050 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| |||||| | || | || | |||||| || | || |||||| Sbjct 5051 TGAATCTTTGCCTTGACGTTGTCAATAGTATCCGAAGACTCGACCTCCAGCGTGATGGTC 5110 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || ||||| || ||||||||||| Sbjct 5111 TTTCCAGTCAGTGTCTTGACGAAGATCTGCAT 5142 Score = 100 bits (110), Expect = 2e-16 Identities = 128/174 (74%), Gaps = 8/174 (5%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| | ||| | || | || || ||||||||||||||||| Sbjct 5179 CTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCGGCGAA 5238 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || |||||||| | || | ||||||||||| | || || ||||| | Sbjct 5239 AATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC--A 5296 Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGA 34955 | | ||||| || || ||| || || | ||||||||||||||| |||| Sbjct 5297 T--TGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTTATGGTCTTTCCGGTGA 5348 Score = 100 bits (110), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 8/194 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | |||| |||||||||||||| ||||| | ||| |||| | || Sbjct 5443 AGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCGTCC 5502 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||||| || ||||||||| | || | ||||||||||| Sbjct 5503 TCAAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCC 5562 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || || ||| || || | ||| || Sbjct 5563 TGAATCTTCGCCTTGAC--AT--TGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGAT 5618 Query 34942 GGTCTTTCCCGTGA 34955 |||||| || |||| Sbjct 5619 GGTCTTGCCGGTGA 5632 >seq400 Length=67953 Score = 98.7 bits (108), Expect = 6e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | || ||||||||| ||||| ||||| | ||| |||| |||| Sbjct 23263 AGGACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCC 23322 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||||||||||||||||||||| || |||||||| | || | || |||||||| Sbjct 23323 TCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCTTCCTTGTC 23381 >seq1257 Length=334001 Score = 84.2 bits (92), Expect = 1e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||| ||||| ||||| | || |||| | || Sbjct 8905 AGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCGTCC 8846 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||||||||||||||| || || |||||||| | || | ||||||||||| Sbjct 8845 TCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 8787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325686290215160