Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1500 147 4e-30 >seq1500 Length=44508 Score = 147 bits (162), Expect = 4e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||| || || || || ||||| || || ||||| | || | || || Sbjct 4699 ACGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCAAGCGTCCTGCC 4758 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || ||||| || ||||||||||| || | || || || ||||| || || ||||| Sbjct 4759 GTCCTCAAGTTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTT 4818 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || |||||||| || ||||| || ||||| ||||| | | ||| || |||||||| || Sbjct 4819 GTCCTGAATCTTCGCCTTTACGTTGTCAATGGTATCGCTTGATTCCACCTCCAAAGTAAT 4878 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| || | ||||| || || || ||||| Sbjct 4879 CGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 4914 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || ||||| || || || || ||||| ||||| || || | Sbjct 4914 TACCACCACGCAGACGGAGCACCAAGTGAAGTGTCGACTCCTTCTGGATATTGTAGTCGG 4973 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | || ||||| | || || || |||||||| || | ||| || ||||||| Sbjct 4974 CAAGAGTACGGCCATCTTCCAACTGCTTGCCCGCAAAGATGAGACGTTGCTGGTCTGGAG 5033 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || ||||||||||| || || || ||||| ||||| || || | Sbjct 5034 GAATACCTTCCTTGTCCTGAATCTTTGCCTTGACGTTGTCAATAGTATCCGAAGACTCGA 5093 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || ||||| || |||| ||||| || || |||||||| Sbjct 5094 CCTCCAGCGTGATGGTCTTTCCAGTCAGTGTCTTGACGAAGATCTGCAT 5142 Score = 86.0 bits (94), Expect = 1e-11 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || | ||||||||||| || ||||| || || || || | Sbjct 5142 TACCACCACGCAGACGGAGGACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGG 5201 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || ||| ||||| || ||||| ||||| || || || || | || || || || | Sbjct 5202 CAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCCGGGG 5261 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || ||||| || || || || | || | Sbjct 5262 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCAA 5321 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGT 82786 | || | ||||| ||||| || || Sbjct 5322 CCTCGAGGGTTATGGTCTTTCCGGT 5346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981806569355960