Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq50 293 2e-74 seq1363 145 7e-30 seq1500 111 2e-19 seq1257 87.8 2e-12 seq400 82.4 7e-11 >seq50 Length=66349 Score = 293 bits (324), Expect = 2e-74 Identities = 1124/1745 (64%), Gaps = 69/1745 (4%) Strand=Plus/Minus Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAG---TCGCTT 148108 |||||| ||| |||||||| || ||||||||||| ||||| | ||||| ||||| Sbjct 65348 CGACTGTGACTGATCAATGAAAGCACCACGGTCAGCAGCCATCTGAATGATGGTTCGCTG 65289 Query 148109 TATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGAT 148168 | || ||||| | |||||||| ||| |||| | | || || ||| | ||| Sbjct 65288 ---CGAGATTTCCCAAACGGTCTTGTAGAGCGTCTTGGTCTCCTCAGGGATGTTGGGGAT 65232 Query 148169 GCGCTGCACCG-AGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGT 148227 | |||| | | || | | |||| ||| | || ||| | || | | ||| Sbjct 65231 TCT-TGCAATGGAACCACCCTCGGCAATAATGCGGTTCTTCATGTTCTCAGACCACAGGC 65173 Query 148228 TGAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCA 148287 | |||| || || | || ||| | | || || ||||| ||||| || ||||||| Sbjct 65172 CCATGTCGACGAGATCCTTGAGCAGCCATGGGTTGACAACCTGGAACTCACCCGCGAGCA 65113 Query 148288 CGCGCCGCAGA-TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATC 148346 | || || ||| || | ||| || |||| || || | |||||||| || | |||| Sbjct 65112 CACGTCG-AGAGTAGATGTTAGATGTGTACGGCTCGAAGCATTCGTTGTTTCCGAGAATC 65054 Query 148347 TGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTT 148406 || | ||||| || || |||||| || | || || |||||||| | ||| | | Sbjct 65053 TGGGAGGTCGAGGCAGTTGGCATGGGAGCGATCAACAAAGAGTTGCGTACACCATGTTGA 64994 Query 148407 TTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAG--CGGCGACGGTGTCACGTTCCACA 148464 || ||| ||||| | |||||||||||||| ||| | |||| |||||||||| Sbjct 64993 GCAATCTTGGCCTTCAACTCTGCCCAGTCCCAGAGGTCGGTGGGGGTG--ACGTTCCACA 64936 Query 148465 TGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGT 148524 | |||||||| || | || | | |||| |||||||| | || || || Sbjct 64935 TATCGTACTGAAGGGTTCCCTGAGAAACGGGAGATCCCTCGTAGGTCTCATATGGACCAA 64876 Query 148525 GCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTT 148584 || || || | |||||| | || || ||| ||| || |||||| || | Sbjct 64875 GCTCCTTGGCAATGTCGCAGGAAGAAGTAAGAGCAGCGTGGTAGATGGTCTCGAAGATCT 64816 Query 148585 GCCTGTTGAGCAGC---GCC---GCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAA 148638 | |||||||| | ||| |||||| ||| | |||| |||| | | Sbjct 64815 GGATGTTGAGCTTCTTGGCCTCTGCCGAC------TCGAAAGGCAGGCGCAATGCGAGGA 64762 Query 148639 ACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGC 148698 | || ||||| || || |||||||||| || || || ||||| | |||| | ||| Sbjct 64761 AAGCATCGGCCAGACCTTGTACGCCCATACCGATAGGTCGGTGACGGAAGTTGCTGCGGC 64702 Query 148699 GCGCGCTCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACC 148757 | || ||| | || ||||||||| || ||||||||| ||||| ||||| || Sbjct 64701 GTGCCTCCTCAACGGGGTAGTGGTTGACTTCAATGATCTTGTTCAAG-TTGCGGGTGACA 64643 Query 148758 ACCTTTGTAATTCTGCGCAGC------AATTCAAAATCG---TACTTGTCATCTACGATG 148808 |||| || | | | ||| || ||||| ||| ||||| || || | Sbjct 64642 ACCTGGGTGACCTCGTGAAGCTTCTGGAAGTCAAACTCGCCACGCTTGTAGTCAACAA-- 64585 Query 148809 CATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTAC 148868 | | || ||| | ||| || |||||||| || || |||||| ||||| ||||| Sbjct 64584 -AAGAGGGCAGGGCAAGAGAAGCAAGATTGCAAACAGCAACCTCATCAGGGGCAGTGTAC 64526 Query 148869 TCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTC 148928 || || ||||| | |||||| ||| || ||| ||||| |||||| || |||||| Sbjct 64525 TCGACAATCTCCGTGCACAGGTTGGAGCTACGGATAGTGCCCAAGTTCTTCTGGTTGCTC 64466 Query 148929 TTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCC 148988 || | |||||| || |||||||| ||||| | || |||||||| ||| | ||| Sbjct 64465 TTACGGTTGCAAGCATCCTTGTAGAGCATAAAGGGGTTACCAGTTTCGGTCTGGGCTTCG 64406 Query 148989 ACTAT---GAACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACC-----CT 149040 | || | ||| ||| | ||| ||||| || | | | || | || || Sbjct 64405 AGGATGGCGTACC---ACAGCTTCTGGGCGCGGAC-AGTTTCACG----GCCCTTGTTCT 64354 Query 149041 CCTGCTCGTA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACC 149098 || |||||| | ||| | ||| ||| ||| | || |||||| || |||| || Sbjct 64353 GCTTCTCGTAGCTCTCGTACAGAGC--CTCAAACTCATCACCGTAGACGTCAGCGAGGCC 64296 Query 149099 GGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAA 149158 |||||||| || ||||||||||| | |||| | |||| | | | || |||||||| || Sbjct 64295 GGGGCACTCGTTGGGGCACATGAGAGTCCACTCCCCGTTCTCCTGGACACGCTTCATGAA 64236 Query 149159 CAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCAT 149218 ||||||||| | ||| || ||||| | || || || || || || ||| Sbjct 64235 CAGATCGGGGATCCACAGAGCGTAGAACAGATCACGGGCGCGAACCTCCTCTTTGCCGTG 64176 Query 149219 GTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGC 149278 ||| ||| || | || | || || | || |||||||| ||||||| ||| | || Sbjct 64175 GTTCTTGCGGAGATCAAGGAAGCCAAAGACATCGGCGTGCCATGGCTCAAGGTAAATGGC 64116 Query 149279 GAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACAC 149335 | || || |||| ||||| ||||||||||||| ||| | ||||||| |||| Sbjct 64115 AAAAGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGTACAC 64056 Query 149336 TCGAACCATAGGTTCAATG---CCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCC 149392 || | |||||| |||| || | | || ||||| || | |||| ||| Sbjct 64055 ACGGAGCATAGG---AATGAGACCGTTTGATGTTCCGTTGGTGCCACCAATGTATGAGCC 63999 Query 149393 GCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGC 149452 || || | | ||| ||||||| || || ||||| || ||| ||||| || Sbjct 63998 AGTAGCACGAATTCGGTGGACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAGGC 63939 Query 149453 GCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAA 149512 ||| ||| || |||||| || || |||||||| |||||| | || || Sbjct 63938 ACAGGTCTTGAGTGTATCGTAGATACCGTCAATGCTGTCCTCCTTCATATCGATGAGGAA 63879 Query 149513 GCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGT 149572 ||| || |||| || || | | ||||| || ||||| || || ||||||||| Sbjct 63878 GCATGAAGACATCTGAGGCGAGGGAGTGCCTGCATTGAACAGTGTCGGTGAGGCGTGTGT 63819 Query 149573 AAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATG 149632 || ||||| || ||| || || | ||| | | || ||||| ||||| || Sbjct 63818 GAAGTATTTTTGTGACATGTAGTCATAGGTCTCAATGGCCTTCTCAATGTCCTCGCCGTG 63759 Query 149633 GATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAAT 149692 || || | ||||| ||||| ||||| || ||||| ||||| || || ||| | || Sbjct 63758 AATACCAACAGCGACACGCATGAGCATGTGTTGCGGACGCTCAGCAACCTTGCCATCTAT 63699 Query 149693 TTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCG 149752 ||| | ||| || || |||||| |||||||| | | ||||| ||||| || Sbjct 63698 GCGGAGGAGGTATGAACGCTCAAGCGTCTTGAAGCCAAAGAATTGGTAGTTGAAGTCTCG 63639 Query 149753 GCCGT 149757 | ||| Sbjct 63638 GTCGT 63634 >seq1363 Length=52244 Score = 145 bits (160), Expect = 7e-30 Identities = 346/517 (67%), Gaps = 11/517 (2%) Strand=Plus/Minus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| || ||||| || ||||| || ||||| || ||||| | | ||| ||||| | Sbjct 38886 CTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGCGAGATGTTCTC 38827 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || ||||| ||||| | |||| || || | | ||||| | ||||| Sbjct 38826 CATGAAGTCGAAGGGGTTCGTGGCGTGGTAGACCTTGGTGTTGCCCAGAGCGAGAAGCAG 38767 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGC 120530 ||||| || || ||||||||||||| ||||||| || ||||||||||| ||||| || Sbjct 38766 ACGGTCAGCAACGAACTCAATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGCAAAGC 38707 Query 120531 CACCGGCAACGCCGACG-TGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGG 120589 ||| | | || || | | ||||| | ||||||| | || ||||| ||| |||| Sbjct 38706 GCATGGC-AGGGCGTCGCTAAGGAACTCTTGCTCAATGGCAACAGCCTCGGTGATGATGG 38648 Query 120590 CGAGCATAG---TGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACG 120646 | | | || | || ||| | ||||| || | | | || |||||| | Sbjct 38647 CCTGGACAGACTCCTTGCTGGG--GCGGGTGTT-GAGAAGAG---AGAAGAGCAGGCAGG 38594 Query 120647 CAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGG 120706 | ||||| ||||||| ||||||||| || || || ||||||||| || || || || | Sbjct 38593 CGAAGTCGGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTAAGACCAG 38534 Query 120707 GCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGC 120766 |||| | || | |||||| |||| |||| ||||| || ||||| | | Sbjct 38533 GCATCAGACCACGCTTCTTGAGCCAGAAGATGGATGCAAATGATCCACTGAAGAAGATAC 38474 Query 120767 CCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCC 120826 |||| ||| || || || || | || | ||| || || | ||||| ||||| Sbjct 38473 CCTCGACGGCAGCGAATGCAACGAGACGGTTGGCAAAGGTGGAGTTCTTGTCAGAGATCC 38414 Query 120827 ACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 | || ||||| |||||||| ||||| | ||| || Sbjct 38413 ATCGCAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGG 38377 >seq1500 Length=44508 Score = 111 bits (122), Expect = 2e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||| || ||||| || ||||| ||| | | ||| |||||| ||||||||||| Sbjct 5457 GGTGGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCC 5516 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||||||||| || |||||||| |||||||| ||||| ||| Sbjct 5517 GGCGAAGATCAAACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTCGCCTT 5576 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || | || | ||||||| || ||| || |||| ||||| ||| |||||||| Sbjct 5577 GACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 5630 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||||||| | | ||| |||||| || ||||| || Sbjct 4718 GTGGACTCCTTCTGGATGTTGTAATCGGCAAGCGTCCTGCCGTCCTCAAGTTGCTTACCA 4777 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | ||||| ||||||||||| |||||||| || |||||||| ||||| ||| Sbjct 4778 GCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTT 4837 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| || ||| | | ||||| || | || | || |||||||| ||||| Sbjct 4838 ACGTTGTCAATGGTATCGCTTGATTCCACCTCCAAAGTAATCGTCTTGCCGGTGAGAGTC 4897 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 4898 TTGACGAAGATTTGCAT 4914 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| |||||||| ||| | | || | | | || || | ||||||||| Sbjct 4946 GTCGACTCCTTCTGGATATTGTAGTCGGCAAGAGTACGGCCA-TCTTCCAACTGCTTGCC 5004 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| || |||||||| ||||| || ||||||||||| |||||| ||| Sbjct 5005 CGCAAAGATGAGACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGAATCTTTGCCTT 5064 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| || || | | ||| || || | |||| ||| || || ||||| || Sbjct 5065 GACGTTGTCAATAGTATCCGAAGACTCGACCTCCAGCGTGATGGTCTTTCCAGTCAGTGT 5124 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 5125 CTTGACGAAGATCTGCAT 5142 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/175 (73%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| ||| | | || || || ||||| || ||||| | Sbjct 5174 GTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCG--TCCTCAAGTTGCTTTC 5231 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| || ||||||||||| || || ||||| |||||||| |||||| || Sbjct 5232 CGGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCT 5291 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | || | ||||||| || ||| || |||| ||| | ||| || ||||| Sbjct 5292 TGACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTTATGGTCTTTCCGGT 5346 >seq1257 Length=334001 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||| ||||| || ||||| ||| | | ||| |||||||||| Sbjct 8899 AAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCGTCCTCGAGC 8840 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 ||||| || ||| | ||||| ||||||||||| || || ||||| |||||||| Sbjct 8839 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 8787 >seq400 Length=67953 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| | | ||| | | | |||||||| ||||| || Sbjct 23278 GTTGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCA-TCCTCGAGTTGCTTTCC 23336 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || || |||||||||||||| |||||| ||| Sbjct 23337 GGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 23396 Query 133583 GA 133584 || Sbjct 23397 GA 23398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483410889873600