Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq50 179 4e-40 >seq50 Length=66349 Score = 179 bits (198), Expect = 4e-40 Identities = 924/1450 (64%), Gaps = 43/1450 (3%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGA-TACACATTGCTAGTGAAAGG 146951 ||||| || || ||||| ||||| |||||||||| |||| || | || ||| | || Sbjct 65140 TTGACAACCTGGAACTCACCCGCGAGCACACGTC-GAGAGTAGATGTTAGATGTGTACGG 65082 Query 146952 CTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCAC 147011 ||| || | || || || || | || |||| || | || || |||||| || | Sbjct 65081 CTCGAAGCATTCGTTGTTTCCGAGAATCTGGGAGGTCGAGGCAGTTGGCATGGGAGCGAT 65022 Query 147012 CAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCA 147071 |||||| || || || | ||| | | || ||| ||||||| | ||||||||| Sbjct 65021 CAACAAAGAGTTGCGTACACCATGTTGAGCAATCTTGGCCTTCAACTCTGCCCAGTCCCA 64962 Query 147072 CA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGA 147129 | ||| | ||| || ||||||||||| |||||||| || ||| || ||||| Sbjct 64961 GAGGTCG--GTGGGGGTGACGTTCCACATATCGTACTGAAGGGTTCCCTGAGAAACGGGA 64904 Query 147130 CTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAAT-TCACAGCTTGCCTCGAG 147188 || || | || || || || | | |||| || ||| | || Sbjct 64903 GATCCCTCGTAGGTCTCATATGGACCAA-GCTCCTTGGCAATGTCGCAGGAAGAAGTAAG 64845 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248 || | | ||| ||||| ||| ||| || |||| || | || ||| | ||| Sbjct 64844 AGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCTGCCGACTC 64785 Query 147249 GTAAGGCATACGCAGAAGC-ACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAG 147307 | |||||| |||| | || | || |||||||||| ||| || | || | ||||||| Sbjct 64784 GAAAGGCAGGCGCA-ATGCGAGGAAAGCATCGGCCAGACCTTGTACGCCCATACCGATAG 64726 Query 147308 GTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAA 147367 |||| || ||||||||| || | | | ||| ||||||||| ||||| | Sbjct 64725 GTCGGTGACGGAAGTTGCTGCGGCGTGCCTCCTCAACGGGGTAGTGGTTGACTTCAATGA 64666 Query 147368 TCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAA- 147426 ||||||| | ||| || ||||| | || | | || |||| ||| ||| | Sbjct 64665 TCTTGTTCAAGTTGCGGGTGACAACCTGGGTGACCTCGTGAAGCTTCTGGAAGTCAAACT 64606 Query 147427 -GTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGC 147485 | | || ||| | | || | | || ||| | ||| || |||||||| || || Sbjct 64605 CGCCACG-CTTGTAGTCA-ACAAAAGAGGGCAGGGCAAGAGAAGCAAGATTGCAAACAGC 64548 Query 147486 CGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGAC 147545 ||| || | | | |||||| || || || | |||||||||| || || Sbjct 64547 AACCTCATCAGGGGCAGTGTACTCGACAATCTCCGTGCACAGGTTGGAGCTACGGATAGT 64488 Query 147546 TCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCC 147605 ||||| || | ||| ||||| || || ||||| || || ||| ||||||| | || Sbjct 64487 GCCCAAGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCTTGTAGAGCATAAAGGGGTT 64428 Query 147606 GCCGGTCTCGACTTGCGTTTCAACGATAAACCTATG-CAGGTCCTGCGCTCGCACCCGCT 147664 || || ||| || | ||| | ||| | || ||| | ||| || || || | | Sbjct 64427 ACCAGTTTCGGTCTGGGCTTCGAGGATGG-CGTACCACAGCTTCTGGGCGCGGACA-GTT 64370 Query 147665 GCCGATAGCGGCCCTCGTTTT------CGTACCGCTCGTACAACCGCTCAAACTCGTCGC 147718 | ||||||| ||| | |||| | |||||||| ||||||||| || | Sbjct 64369 TCA-----CGGCCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCCTCAAACTCATCAC 64315 Query 147719 CGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCG 147778 ||||| || || |||||||| |||| | || ||||| || | |||| ||| | Sbjct 64314 CGTAGACGTCAGCGAGGCCGGGGCACTCGTTGGGGCACATGAGAGTCCACTCCCCGTTCT 64255 Query 147779 CGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTT 147838 | | || || ||| |||||||| || | |||||| ||||| | ||||| || || Sbjct 64254 CCTGGACACGCTTCATGAACAGATCGGGGATCCACAGAGCGTAGAACAGATCACGGGC-- 64197 Query 147839 TGCAATCCTCGGCGC--CCATGTTGCGTTTC--AAATTAAGCACGCTATAGATGTCGGCG 147894 || | |||| | || || | | || | | || ||| | || | ||| |||||| Sbjct 64196 -GCGAACCTCCTCTTTGCCGTGGTTC-TTGCGGAGATCAAGGAAGCCAAAGACATCGGCG 64139 Query 147895 TGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCCTGGTCGACA 147951 ||||| || |||| ||| | ||| | ||||| ||||| || ||||||||||| Sbjct 64138 TGCCATGGCTCAAGGTAAATGGCAAAAGCACCGGGGCGCTTGTTGCCACCCTGGTCGACG 64079 Query 147952 TGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTG 148011 | ||| | ||||||| |||| || | ||| || || ||| | | || |||||| Sbjct 64078 TAGCGAGCAGTGTTGTTGTACACACGGAGCATAGGAATGAGACCGTTTGATGTTCCGTTG 64019 Query 148012 GTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCG 148071 ||| | || | ||| || || | | ||| ||||| | ||||| ||||| Sbjct 64018 GTGCCACCAATGTATGAGCCAGTAGCACGAATTCGGTGGACGTTGAGACCAATACCGCCA 63959 Query 148072 CCGTACTTTGATATGGCAGCGCAATCGCC--CAATGTCGTGTAGATGCCGTCGATGCTGT 148129 || ||| || || || ||| | | | ||| |||||| ||||| ||||||| Sbjct 63958 GCGGTCTTGGAGAT--CAAGGCACAGGTCTTGAGTGTATCGTAGATACCGTCAATGCTGT 63901 Query 148130 CGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGA 148189 | | || | | | | || || ||| |||| || || | || || || || Sbjct 63900 CCTCCTTCATATCGATGAGGAAGCATGAAGACATCTGAGGCGAGGGAGTGCCTGCATTGA 63841 Query 148190 AAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAG 148249 | || || || ||||| || || ||||||| ||| | ||| |||||||| | Sbjct 63840 ACAGTGTCGGTGAGGCGTGTGTGAAGTATTTTTGTGACATGTAGTCATAGGTCTCAATGG 63781 Query 148250 CGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTC 148309 | | || ||||| ||||||||||| || | ||||| |||||||||||||| || || | Sbjct 63780 CCTTCTCAATGTCCTCGCCGTGAATACCAACAGCGACACGCATGAGCATGTGTTGCGGAC 63721 Query 148310 GTTCGGCAAC 148319 | || ||||| Sbjct 63720 GCTCAGCAAC 63711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476601429470400