Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1363 91.5 1e-13 seq50 87.8 2e-12 >seq1363 Length=52244 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 110712 GCTCGATGATATTATTGTTCACGATGACGTCGGCGGCAGCGAAAAAGGCGAGAACGTGTT 110771 |||||| | || | ||| |||||| | |||| ||| ||||| |||||||| ||||| Sbjct 38170 GCTCGACCAGGTTCTCGTTGACGATGCCATCGGAGGCTGCGAAGAAGGCGAGGACGTGGG 38111 Query 110772 TAAGAAAGAATCGTTCCTTGTCGTTCAGTTTATTGTTCCAGTCTTCAAAGTCCTTGGACA 110831 | ||||| ||||| | ||| || || ||||||||||| | | |||||||| | Sbjct 38110 AGATGAAGAAGCGTTCGTCGTCATTGAGACGCTTGTTCCAGTCGTGGAGATCCTTGGAGA 38051 Query 110832 TGTCGATCTCTTCGACCTTCCAGTGACAATCGACCGCCTTCTTGTACGATTGCCA 110886 ||||| ||||| | ||||| | || | | |||||||||||| |||||| Sbjct 38050 GATCGATTTCTTCAGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACATTTGCCA 37996 >seq50 Length=66349 Score = 87.8 bits (96), Expect = 2e-12 Identities = 189/280 (68%), Gaps = 2/280 (1%) Strand=Plus/Minus Query 138126 AGCACGAATTTGAGTTACGTTGAGGCCGATGCCGCCTCCGTGTTTAGATATCATGGCACA 138185 |||||||||| | |||||||| || || ||||| || || || |||| |||||| Sbjct 63995 AGCACGAATTCGGTGGACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACA 63936 Query 138186 ATCGTTGAGAGTTCTATAGATGCCGTTTATGCTGTCTTCCTGGATGTTGAGTAGATAACA 138245 ||||| || ||||| |||| |||||||| |||| || | || || | || Sbjct 63935 GGTCTTGAGTGTATCGTAGATACCGTCAATGCTGTCCTCCTTCATATCGATGAGGAAGCA 63876 Query 138246 CGACGACATTTGAGGCATTTTCATGCCAGCCGAGAATAGAGTGGGACTAGCGTGGGTAAA 138305 || ||||| |||||| |||| || ||| || || || ||||| || || Sbjct 63875 TGAAGACATCTGAGGCGAGGGAGTGCCTGCATTGAACAGTGTCGGTGAGGCGTGTGTGAA 63816 Query 138306 C-ATTTTCGAGCGCATCAATCTATATGACTCGATCGCACTCTCGATATCATCACCATGAA 138364 ||||| | | ||| | ||| | ||| || || |||| || || || || |||| Sbjct 63815 GTATTTTTGTGA-CATGTAGTCATAGGTCTCAATGGCCTTCTCAATGTCCTCGCCGTGAA 63757 Query 138365 TCTGAAGAGCGACACGCATCAGCATGTGTTGAGGTCTCTC 138404 | || |||||||||||| ||||||||||| || | ||| Sbjct 63756 TACCAACAGCGACACGCATGAGCATGTGTTGCGGACGCTC 63717 Score = 82.4 bits (90), Expect = 7e-11 Identities = 121/168 (72%), Gaps = 5/168 (3%) Strand=Plus/Minus Query 137032 GTGAACGGCTCGAACGATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATG 137091 ||| |||||||||| |||||||||| || | |||||| | |||| || || |||||| Sbjct 65089 GTGTACGGCTCGAAGCATTCGTTGTTTCCGAGAATCTGGGAGGTCGAGGCAGTTGGCATG 65030 Query 137092 TAAGCGATCAACAATGAATTCCGTAAACCGTGTACGGCCAATTGTTG-CTTGAGCTCTTT 137150 |||||||||||| || || |||| ||| ||| | |||| | | ||| | |||| Sbjct 65029 GGAGCGATCAACAAAGAGTTGCGTACACCATGT-TGAGCAATCTTGGCCTTCAACTCTGC 64971 Query 137151 CCAGTTCCACAGATTGTTCGATTGGGTTATATTCCACAAATCAAACTG 137198 ||||| ||| || | | | | |||| | ||||||| ||| |||| Sbjct 64970 CCAGTCCCAGAGGTCGGTGG---GGGTGACGTTCCACATATCGTACTG 64926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445085275564800