Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1218 159 5e-33 seq1363 147 3e-29 seq50 91.5 2e-12 >seq1218 Length=16324 Score = 159 bits (176), Expect = 5e-33 Identities = 327/486 (67%), Gaps = 0/486 (0%) Strand=Plus/Plus Query 332839 GCGACCGGCGATTTGGGCGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTG 332898 ||| | | ||| || ||||| |||||||| | |||| |||||||| || ||| ||| Sbjct 11032 GCGGCGGACGACCTGTGCGTCTGTGAGGCGGGCGTAGCGGAGGATGGCGCAGCGGGACTG 11091 Query 332899 CAGGGCCTCGATGACCATTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGT 332958 |||| |||||||| | | ||| ||||||||| | ||| || || || || | | Sbjct 11092 GAGGGGCTCGATGATCTTGTTTGACTGGTTGCAGGCGAAGGCGAAGCGGGTGGTTGCGCT 11151 Query 332959 ATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTC 333018 | |||||||||| ||||| ||||||||||| | || | || ||| || || Sbjct 11152 GTAGATTTCCATGGTGCGGCGGAGTGCCTGTTGGGCACCGCTTGTCATGCTGTCTGCTTC 11211 Query 333019 GTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTG 333078 ||||||||||| | ||| || | ||| | ||||| || ||||| |||| | Sbjct 11212 GTCGAGGATGACTAGCTTTTGTCTGCCGGGGGGCAGTGTGACTTTTTTCTGGGCGAAGCC 11271 Query 333079 TTTGATGATCTTGCGCACGACGTCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCAC 333138 |||||| ||||| |||||||| | |||||||||||| || |||||||| ||||| || Sbjct 11272 CTTGATGCGGTTGCGGACGACGTCGATGCCGCGCTCGTCGGAGGCGTTGAGCTCGAGGAC 11331 Query 333139 GGCCTCGTCGGCGGCCGCACCCAAGAGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTT 333198 ||| || | | ||| | || | ||| ||| || ||||| |||| || || || Sbjct 11332 GGCTTCTTTGTAGGCGTCGCCGAGGAGTTGGCGGGCGAGGCAGAGGATGGAGGTTGTTTT 11391 Query 333199 GCCCGTGCCGGGCGGACCCGCCAGCAAGAGGTTGGGCATGTTGCCGTCGGCGGCCAGCGC 333258 ||| | || ||| || | | | | || ||||||||||| || || | Sbjct 11392 GCCGATACCTGGCATGCCGGATATGATCATGTGTGGCATGTTGCCATCCTTTGCAATGAT 11451 Query 333259 CTTGAGGTAGGCAACGGCGTGCTCGTTGCCGACAATGTCGTCGAGCACCATTGGGCGGTA 333318 ||||||| ||| || | ||||||||| | |||||||| | || ||||| Sbjct 11452 CTTGAGGCGCTCAATGGTCTCGGTGTTGCCGACGACATCGTCGAGGTAGACGGGACGGTA 11511 Query 333319 CTTTTC 333324 |||||| Sbjct 11512 CTTTTC 11517 >seq1363 Length=52244 Score = 147 bits (162), Expect = 3e-29 Identities = 209/290 (72%), Gaps = 17/290 (6%) Strand=Plus/Plus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 ||| |||||||| || ||||||||||| || || |||||||| || || |||| ||| Sbjct 37996 TGGCAAATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACCGCTGAAGAAATCGATCTCTC 38054 Query 1455839 CGCCGA----CACGGTCCACTGG-----GTGTCGCTGAGCGACGACGAGCGCCATTTCAT 1455889 | || |||| ||||| | ||| | | |||||||| ||| ||||| Sbjct 38055 CAAGGATCTCCACG----ACTGGAACAAGCGTCTC--AATGACGACGAACGCTTCTTCAT 38108 Query 1455890 CAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCG 1455949 | |||||||||||||| || ||| ||| |||||||||||| ||||||||||| || Sbjct 38109 CTCCCACGTCCTCGCCTTCTT-CGCAGCCTCCGATGGCATCGTCAACGAGAACCTGGTCG 38167 Query 1455950 GCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCG 1456009 || || || || || ||| | || |||||||| | || ||||| ||||||||| Sbjct 38168 AGCGTTTCTCGAGCGAAGTACAAATCCCTGAGGCACGATGCTTCTACGGCTTCCAGATCA 38227 Query 1456010 CCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTAC 1456059 || || || |||||||||| |||||||| || || |||||||| ||| Sbjct 38228 TGATGGAGAATGTCCACTCTGAGACCTACTCCCTGCTCATCGACACATAC 38277 Score = 104 bits (114), Expect = 3e-16 Identities = 178/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| |||||| || | || ||| ||||||| | ||||| | ||||| || Sbjct 38650 ATCATCACCGAGGCTGTTGCCATTGAGCAAGAGTTCCTTAGCGACGCCCTGCCATGCGCT 38709 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 | ||||||||||||||| ||||||||||||||||||||| || || || ||||| | Sbjct 38710 TTGCTCGGCATGAACGCCAA-GCTCATGTGCCAGTACATTGAGTTC-GTTGCTGACCGTC 38767 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||| || || ||| | ||| ||||| | | ||||| ||| | ||| Sbjct 38768 TGCTTCTCGCTCTGGGCAACACC-AAGGTCTACCACGCCACGAACCCCTTCGACTTCATG 38826 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 ||| |||||||| | |||||||||||||| |||||| || || || || ||| Sbjct 38827 GAGAACATCTCGCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAG 38886 Query 1456762 AAGGCCGGCGTCA 1456774 ||||| || |||| Sbjct 38887 AAGGCTGGTGTCA 38899 >seq50 Length=66349 Score = 91.5 bits (100), Expect = 2e-12 Identities = 175/258 (68%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 || || || || ||||| ||||| || || |||| || || ||||| || | || Sbjct 63831 CCGACACTGTTCAATGCAGGCACTCCCTCGCCTCAGATGTCTTCATGCTTCCTCATCGAT 63890 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| || || || || ||||| || || |||||| || || | |||||| Sbjct 63891 ATGAAGGAGGACAGCATTGACGGTATCTACGATACACTCAAGACCTGTGCCTTGATCTCC 63950 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| | || ||||| || ||| | || ||| | || || | ||| | ||| | Sbjct 63951 AAGACCGCTGGCGGTATTGGTCTCAACGTCCACCGAATTCGTGCTACTGGCTCATACATT 64010 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 | ||||||||||| || ||||| || | || ||||| || || | ||| |||| Sbjct 64011 GGTGGCACCAACGGAACATCAAACGGTCTCATTCCTATGCTCCGTGTGTACAACAACACT 64070 Query 260165 GCGCGCTACGTCGACCAG 260182 || ||||||||||||||| Sbjct 64071 GCTCGCTACGTCGACCAG 64088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177653018985680