Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq50 297 2e-75 seq1283 89.7 6e-13 >seq50 Length=66349 Score = 297 bits (328), Expect = 2e-75 Identities = 1116/1730 (65%), Gaps = 29/1730 (2%) Strand=Plus/Minus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 ||||| |||||||| ||||||||||| || | |||||| || | ||||| || | | Sbjct 65446 CGGAGGTAGTACATGCCGGTCTTGAGACCAAGCTTCCATCCGGCAAAGTGCATCGAGGTG 65387 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGA 110480 | |||| ||| ||||| | |||| | ||||| ||| ||||| | ||||||| Sbjct 65386 ATCTTGCCCATGGTTGGCTCCTTCATGTGAATGTTCAGCGACTGTGACT--GATCAATGA 65329 Query 110481 AGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCAT--CTTAATTTCCCAAACTGT 110538 | || || | || ||||| | ||||| | ||| | ||||||||||| || Sbjct 65328 AAGCACCACGGTCAGCAGCCATCTGAATGA--TGGTTCGCTGCGAGATTTCCCAAACGGT 65271 Query 110539 GCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGG--ATGGAACCCCCC 110596 ||||| ||||| | || || ||||| | || | ||||| | |||||||| ||| Sbjct 65270 CTTGTAGAGCGTCTTGGTCTCCTCAGGGATGT-TG-GGGATTCTTGCAATGGAACCACCC 65213 Query 110597 GCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTG 110656 | | ||| | | |||||| | || ||||| || || || | ||| || ||| Sbjct 65212 TCGGCAATAATGCGGTTCTTCATGTTCTCAGACCACAGGCCCATGTCGACGAGATCCTTG 65153 Query 110657 ACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTT 110716 | || |||||||| |||||||| ||||| | || ||||||||| Sbjct 65152 AGCAGCCATGGGTTGACAACCTGGAACTCACCCGCGAGCACACGTCGAGAGTAGATGTTA 65093 Query 110717 GTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGC 110776 | |||||| || || |||||||| || || || | || || | ||| ||||| |||||| Sbjct 65092 GATGTGTACGGCTCGAAGCATTCGTTGTTTCCGAGAATCTGGGAGGTCGAGGCAGTTGGC 65033 Query 110777 ATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACA 110836 || || || ||||| | | ||| || | ||| | | || |||| | | Sbjct 65032 ATGGGAGCGATCAACAAAGAGTTGCGTACACCATGTTGAGCAATCTTGGCCTTCAACTCT 64973 Query 110837 TCCCAGTCGTAGTTG-AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTG 110895 ||||||| || | | | || | || || |||||| || ||||||| || || Sbjct 64972 GCCCAGTCCCAGAGGTCGGTGGGGGTGACGTT-CCACATATCGTACTGAAGGGTTCCCTG 64914 Query 110896 GGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCT 110955 || ||||||| ||||| |||| ||||| | ||| | | | || | || ||| Sbjct 64913 AGAAACGGGAGATCCCTCGTAGGTCTCATATGGACCAAGCTCCTTGGCAATGTCGCAGGA 64854 Query 110956 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTC 111015 | || | ||||| || ||||| || ||||| | || | || |||||| || Sbjct 64853 AGAAGTAAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTC 64794 Query 111016 ATCTGAATCAAATGCGTAGCGGCACAA---AATAAATACATCCGCGAGACCTTGAACACC 111072 | || || || | | | ||| ||| | || |||| || |||||||| || || Sbjct 64793 TGCCGACTCGAAAG-GCA--GGCGCAATGCGAGGAAAGCATCGGCCAGACCTTGTACGCC 64737 Query 111073 CAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATT 111132 || ||| ||||||| ||| || | || || || ||||||||| || || Sbjct 64736 CATACCGATAGGTCGGTGACGGAAGTTGCTGCGGCGTGCCTCCTCAACGGGGTAGTGGTT 64677 Query 111133 TCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTC 111192 ||||||| ||| | || ||| |||| || |||| || ||||| || | Sbjct 64676 GACTTCAATGATCTTGTTCAAGTTGCGGGTGACAACCTGGGTGACCTCGTGAAGCTTCTG 64617 Query 111193 ATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATT 111252 | ||||| || | || | | ||| | || ||||| | || || | ||| Sbjct 64616 GAAGTCAAACTCGCCACGCTTGTAGTCAACAAAAGAGGGCAGGGCAAGAGAAGCAAGATT 64557 Query 111253 GCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACT 111312 ||||||||| |||||| | |||||||| | ||| || || || | |||||| || Sbjct 64556 GCAAACAGCAACCTCATCAGGGGCAGTGTACTCGACAATCTCCGTGCACAGGTTGGAGCT 64497 Query 111313 CTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCAT 111372 || || ||||| ||||| ||||| ||||| |||||| ||||||||||||||||| Sbjct 64496 ACGGATAGTGCCCAAGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCTTGTAGAGCAT 64437 Query 111373 GTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTG 111431 |||| | || || || ||||| | || ||| || || | ||| | | || | ||| Sbjct 64436 AAAGGGGTTACCAGTTTCGGTCTGGGCTTCGAGGATGGCGTACCACAGCTTCTG-GGCGC 64378 Query 111432 GTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCC 111490 | ||| | | ||||| | || | |||||| | ||| || || |||||||| Sbjct 64377 GGACAGTTTC-ACGGCCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCCTCAAACTCA 64319 Query 111491 TCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCA 111550 ||||| |||| | ||| || || || || || || | |||| ||| | || Sbjct 64318 TCACCGTAGACGTCAGCGAGGCCGGGGCACTCGTTGGGGCACATGAGAGTCCACTCCCCG 64259 Query 111551 CCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA 111610 |||| || ||||||||||| || || || |||||||| | | || ||||| | Sbjct 64258 TTCTCCTGGACACGCTTCATGAACAGATCGGGGATCCACAGAGCGTAGAACAGATCACGG 64199 Query 111611 CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCG 111670 ||| |||| || | || ||||| || | |||||||| | | || ||| ||| Sbjct 64198 GCGCGAACCTCCTCTTTGCCGTGGTTCTTGCGGAGATCAAGGAAGCCAAAGACATCGGCG 64139 Query 111671 TGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTAC 111726 |||||||||||||| || | || | || || | | | | ||| | || | || Sbjct 64138 TGCCATGGCTCAAGGTAAATGGCAAAAGCACCGGGGCGCTTGTTG-CCACCCTGGTCGAC 64080 Query 111727 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 111786 ||||| || ||| ||| | || || ||||| ||||| | ||| | |||| || || Sbjct 64079 GTAGCGAGCAGTGTTGTTGTACACACGGAGCATAGGAATGAGACCGTTTGATGTTCCGTT 64020 Query 111787 TGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 111846 || || | ||| || | | || | | |||| || | |||||||| || Sbjct 64019 GGTGCCACCAATGTATGAGCCAGTAGCACGAATTCGGTGGACGTTGAGACCAATACCGCC 63960 Query 111847 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 111906 ||| ||| ||||| ||||| | | || || | |||||||||| || ||| Sbjct 63959 AGCGGTCTTGGAGATCAAGGCACAGGTCTTGAGTGTATCGTAGATACCGTCAATGCTGTC 63900 Query 111907 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAA 111966 |||||| | |||| |||||||| |||||||| || || || || |||||||| Sbjct 63899 CTCCTTCATATCGATGAGGAAGCATGAAGACATCTGAGGCGAGGGAGTGCCTGCATTGAA 63840 Query 111967 GAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGAC 112026 || || |||| ||||| |||| ||| ||||| | ||| || ||||| | | | Sbjct 63839 CAGTGTCGGTGAGGCGTGTGTGAAGTATTTTTGTGACATGTAGTCATAGGTCTCAATGGC 63780 Query 112027 AGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGT 112076 |||||||| || ||||| || || | ||||| ||||||| ||||| Sbjct 63779 CTTCTCAATGTCCTCGCCGTGAATACCAACAGCGACACGCATGAGCATGT 63730 >seq1283 Length=43926 Score = 89.7 bits (98), Expect = 6e-13 Identities = 330/510 (65%), Gaps = 33/510 (6%) Strand=Plus/Minus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 ||| |||||||| || || | ||||| | ||| || | ||| ||||| || | || Sbjct 16713 ATCGAAACGACCAGGTCGCATAAGGGCCTTATCCAGAACGTCCGGTCGATTGGTACCTGC 16654 Query 11512 AATAACCACAA--TGC-CAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATT 11568 || || || | ||| |||| |||| || ||||||||||||||||| | ||||| Sbjct 16653 AAGGACAACTACTTGCTCAGTGGTATTG---AAACCATCCATCTCGGTGAGGATCTGATT 16597 Query 11569 AATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTT------ 11622 | || ||| | ||| || || |||||| || | ||| || Sbjct 16596 GAGGGTGGCTTCACGCTCGTCGTTG---------CCACCACCAAAGTTTTGTTTCGAACG 16546 Query 11623 -GCCC-ACC----GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGC 11676 || | ||| ||||| || ||||| ||||||| || |||||| | | | || || Sbjct 16545 AGCACGACCAATGGCATCGATTTCATCGATGAAGATGATGCATGGTGTACTCTTCCGCGC 16486 Query 11677 GATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTT 11736 | | || || || | || | ||||| ||||| ||||||||||| || || | Sbjct 16485 ATTGGCGAACAGGTCTCTGACTCGCGAAGCACCAACACCTACAAACATCTCGACGAACTC 16426 Query 11737 TGCGGCAGAG-CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGA 11795 || || | |||| || ||| || ||| || || || ||| | || ||| |||| Sbjct 16425 TGATCCACTGACACT-GAAGAAGGGTACACCCGACTCTCCAGCGGTAGCCTTGGCAAGGA 16367 Query 11796 GGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC-- 11853 | ||||| || |||||||| || | ||||| ||| || || |||||||| || || Sbjct 16366 GTGTCTTACCAGTACCTGGGGATCCAGAGAGAATGGCACCACGAGGGATCTTTGCGCCGA 16307 Query 11854 ACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTT 11913 |||| | ||| |||| | ||||||||| |||| ||| || || | || Sbjct 16306 GCTTCTGGA--ATCGGCCGGGATCCTTGAGAAAGGAGACAAACTCCATAATCTCCTGCTT 16249 Query 11914 GGCCGCGTCAATCCCCTCAACATCACTGAA 11943 |||| | || || || |||| |||||||| Sbjct 16248 GGCCTCATCCATGCCGGCAACGTCACTGAA 16219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628019125344000