Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq50 268 1e-66 seq1363 149 8e-31 seq1283 82.4 9e-11 >seq50 Length=66349 Score = 268 bits (296), Expect = 1e-66 Identities = 1124/1749 (64%), Gaps = 53/1749 (3%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCA---GGCATACATATGCATTGAG 117893 |||||||||||||| || |||||||| || ||||||| |||| | ||||| ||| Sbjct 65446 CGGAGGTAGTACATGCCGGTCTTGAGACCAAGCTTCCATCCGGCAAAG---TGCATCGAG 65390 Query 117894 GACAACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATG 117953 | | |||| | |||||| | |||| | ||||| || || ||||| ||| Sbjct 65389 GTGATCTTGCCCATGGTTGGCTCCTTCATGTGAATGTTCAGCGACTGTGACTGATCAATG 65330 Query 117954 AAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCAT--CTTGATTTCCCACACAG 118011 || || || || || ||||| | ||| | | ||| | ||||||||| || | Sbjct 65329 AAAGCACCACGGTCAGCAGCCATCTGAATGA--TGGTTCGCTGCGAGATTTCCCAAACGG 65272 Query 118012 TCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCG 118071 || ||||||| |||| | || || ||||| | ||| || ||||| |||||| Sbjct 65271 TCTTGTAGAGCGTCTTGGTCTCCTCAGGGATGTTGGGGATTCTTGCAATGGAACCACCCT 65212 Query 118072 CCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCA 118131 | | ||| | | |||||| | || ||||| || || || | |||||||| | Sbjct 65211 CGGCAATAATGCGGTTCTTCATGTTCTCAGACCACAGGCCCATGTCGACGAGATCCTTGA 65152 Query 118132 CGAG--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATAT 118188 || ||| | ||||||| |||||||||||||| |||| ||| ||||| | Sbjct 65151 GCAGCCATGGGT--TGACAACCTGGAACTCACCCGCGAGCACACGTC-GAGAGTAGATGT 65095 Query 118189 TGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGG 118248 | | ||||| ||||| ||||| || ||||| || | || |||| || ||||| || | Sbjct 65094 TAGATGTGTACGGCTCGAAGCATTCGTTGTTTCCGAGAATCTGGGAGGTCGAGGCAGTTG 65035 Query 118249 GCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAG 118308 ||||||| || || | | ||| || | ||| | || ||| |||| | Sbjct 65034 GCATGGGAGCGATCAACAAAGAGTTGCGTACACCATGTTGAGCAATCTTGGCCTTCAACT 64975 Query 118309 CGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 118368 | ||||||| || | | | | | ||||||||| |||| ||| | || | Sbjct 64974 CTGCCCAGTCCCAGAGGTCGGTGGGGGTGACGTTCCACATATCGTACTGAAGGGTTCCCT 64915 Query 118369 GGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC--GCCAAT-TCGG 118425 | || | || |||||||| | ||||||||||| | ||| |||| | |||| ||| Sbjct 64914 GAGAAACGGGAGATCCCTCGTAGGTCTCATATGGAC---CAAGCTCCTTGGCAATGTCGC 64858 Query 118426 AGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGG 118485 || | || || ||||| || || || || || || | || | ||||| Sbjct 64857 AGGAAGAAGTAAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGG 64798 Query 118486 CCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACAC 118545 |||| | || || || | || || | | || |||| || |||||||| || | Sbjct 64797 CCTCTGCCGACTCGAAAGGCAGGCGCAATGCGAGGAAAGCATCGGCCAGACCTTGTACGC 64738 Query 118546 CGAGGCCAATTGGGCGATGTCTCATATTAGACTTC--CGAGCGGTCTCCACGGGATAAAA 118603 | | || || || || || | | || || | || || ||| ||||| || Sbjct 64737 CCATACCGATAGGTCGGTGACGGAAGTT--GCTGCGGCGTGCCTCCTCAACGGGGTAGTG 64680 Query 118604 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 118663 || || || | | | || | || ||||||||||| |||| || |||||||| Sbjct 64679 GTTGACTTCAATGATCTTGTTCAAGTTGCGGGTGACAACCTGGGTGACCTCGTGAAGCTT 64620 Query 118664 TTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAG 118723 | | | ||||| || | || | | ||| | || ||||| | || || || Sbjct 64619 CTGGAAGTCAAACTCGCCACGCTTGTAGTCAACAAAAGAGGGCAGGGCAAGAGAAGCAAG 64560 Query 118724 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGA 118783 ||| || |||| |||||| |||||||||| | ||| |||||||||| ||| || Sbjct 64559 ATTGCAAACAGCAACCTCATCAGGGGCAGTGTACTCGACAATCTCCGTGCACAGGTTGGA 64500 Query 118784 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAG 118843 || || |||||||||||||| || || ||| ||| || ||||||||||| || Sbjct 64499 GCTACGGATAGTGCCCAAGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCTTGTAGAG 64440 Query 118844 CATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAG 118902 ||| | || | || || || || |||| | ||| || || | ||| | | || | | Sbjct 64439 CATAAAGGGGTTACCAGTTTCGGTCTGGGCTTCGAGGATGGCGTACCACAGCTTCTG-GG 64381 Query 118903 CTGGCACAGTGGCGTTGGCTCGCCCCTCTTC-----CTCGTACTTTGTGTAGAGGGCTTC 118957 | | ||||| || | |||| | ||| |||||| | ||| || || || Sbjct 64380 CGCGGACAGT----TTCAC-GGCCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCCTC 64326 Query 118958 AAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCA 119017 |||||| ||||| | | || | ||| || || || | ||||| | ||||| ||| Sbjct 64325 AAACTCATCACCGTAGACGTCAGCGAGGCCGGGGCACTCGTTGGGGCACATGAGAGTCCA 64266 Query 119018 TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAG 119077 | || ||||| || ||||||||||| || || |||||||| || || |||| || Sbjct 64265 CTCCCCGTTCTCCTGGACACGCTTCATGAACAGATCGGGGATCCACAGAGCGTAGAACAG 64206 Query 119078 ATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGAT 119137 ||| || |||| | || || | || || || || | || | ||| | | || Sbjct 64205 ATCACGGGCGCGAACCTCCTCTTTGCCGTGGTTCTTGCGGAGATCAAGGAAGCCAAAGAC 64146 Query 119138 ATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTACGACGACCAGC 119191 ||| |||||||| || || ||||| | || | | || | ||| | | ||| | Sbjct 64145 ATCGGCGTGCCATGGCTCAAGGTAAATGGCAAAAGCACCGGGGCGCTT--GTTG-CCACC 64089 Query 119192 CTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGA 119251 ||||| || || | |||||| ||| | ||||| ||||| ||||||| ||| | || Sbjct 64088 CTGGTCGACGTAGCGAGCAGTGTTGTTGTACACACGGAGCATAGGAATGAGACCGTTTGA 64029 Query 119252 TTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATC-GTGGATGTGCAT 119308 | || || || || | || || ||| | | | || | || || ||||| || | Sbjct 64028 TGTTCCGTTGGTGCCACCAATGTATGAGCC--AGTAGCAC-GAATTCGGTGGACGTTGAG 63972 Query 119309 ACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCC 119368 ||||||||| || || ||| ||||| || || | |||| | ||||||| || Sbjct 63971 ACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAGGTCTTGAGTGTATCGTAGATACC 63912 Query 119369 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGT 119428 || || ||| |||| | ||||||||||||| ||||| |||||| ||| || Sbjct 63911 GTCAATGCTGTCCTCCTTCATATCGATGAGGAAGCATGAAGACATCTGAGGCGAGGGAGT 63852 Query 119429 ACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTA 119488 || || ||||| || || |||| ||||| |||| ||| ||||| | ||| || Sbjct 63851 GCCTGCATTGAACAGTGTCGGTGAGGCGTGTGTGAAGTATTTTTGTGACATGTAGTCATA 63792 Query 119489 GGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACAT 119548 |||||| | | | |||||| || ||||||||||| | | ||| ||||| | ||| Sbjct 63791 GGTCTCAATGGCCTTCTCAATGTCCTCGCCGTGAATACCAACAGCGACACGCATGAGCAT 63732 Query 119549 GTATTGGGG 119557 || ||| || Sbjct 63731 GTGTTGCGG 63723 >seq1363 Length=52244 Score = 149 bits (164), Expect = 8e-31 Identities = 309/454 (68%), Gaps = 12/454 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCT-GATATTCTCCAT 129786 ||||| || || ||||||||||||||||| ||||| || | |||| ||| |||||||| Sbjct 38882 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCAGC-AAGCGAGATGTTCTCCAT 38824 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGCTGGCACTCCAATCTGTTTGAGGAGA 129844 || || || |||||| | | || | | ||| || | | | | || ||| Sbjct 38823 GAAGTCGAAGGGGTTCGTGGCGTGGTAGACCTTGGTGTTGCCCAGAGCGAGA--AGCAGA 38766 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 || || | ||| |||||||||||| |||| || || |||||| |||| | Sbjct 38765 CGGTCAGCAACGAACTCAATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGCAAAGCG 38706 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 ||||| || ||||| | |||| | | ||||||| | ||||| || | |||||| Sbjct 38705 CATGGCAGGGCGTCGCTAAGGAACTCTTGCTCAATGGCAACAGCCTCGGTGATGATGGCC 38646 Query 129965 TGAATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAAC 130021 || | | |||| ||| || | | ||| | | || |||||| ||| || Sbjct 38645 TGGACAGACTCCTTGCTGGGGCGGGTGTTGAGAAGAGA---GAAGAGCAGGCAGGCGAAG 38589 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || ||| | ||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct 38588 TCGGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTAAGACCAGGCATC 38529 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 ||||| |||||||| | |||||| || | |||||| ||| ||||||||| ||||| Sbjct 38528 AGACCACGCTTCTTGAGCCAGAAGATGGATGCAAATGATCCACTGAAGAAGATACCCTCG 38469 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 || ||||| |||| |||||| | ||||||| Sbjct 38468 ACGGCAGCGAATGCAACGAGACGGTTGGCAAAGG 38435 >seq1283 Length=43926 Score = 82.4 bits (90), Expect = 9e-11 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 14236 ACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTC 14295 ||| | ||| || |||||||||||||| | ||| |||||| | | | || ||| | Sbjct 16539 ACCAATGGCATCGATTTCATCGATGAAGATGATGCATGGTGTACTCTTCCGCGCATTGGC 16480 Query 14296 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT-TG-GCG 14353 || | |||| |||| | ||||| ||||| ||||||||||| || || | || | Sbjct 16479 GAACAGGTCTCTGACTCGCGAAGCACCAACACCTACAAACATCTCGACGAACTCTGATCC 16420 Query 14354 GCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 14413 | | ||| | || |||||| || || || || ||| | || ||| ||||| ||| Sbjct 16419 ACTG-ACACT-GAAGAAGGGTACACCCGACTCTCCAGCGGTAGCCTTGGCAAGGAGTGTC 16362 Query 14414 TTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 || || || ||||| || | ||||| ||||||||| |||||| | || || Sbjct 16361 TTACCAGTACCTGGGGATCCAGAGAGAATGGCACCACGAGGGATCTTTGCGCC 16309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618422522078400