Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq193 170 6e-37 seq1500 149 2e-30 seq1513 96.9 1e-14 seq400 87.8 5e-12 seq1345 86.0 2e-11 >seq193 Length=97280 Score = 170 bits (188), Expect = 6e-37 Identities = 466/709 (66%), Gaps = 15/709 (2%) Strand=Plus/Minus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 |||| || ||||||||| | || || || || || ||||| | | | | | |||| | Sbjct 70635 CCGCGATCGGAATCGATCTTGGAACCACATACTCATGTGTCGGCATCTTCCGAGATGACC 70576 Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 | | || || || || || || || |||||| | ||||| || || | |||||| || | Sbjct 70575 GCATTGAGATCATCGCCAACGACCAGGGTAACCGCACAACACCCTCGTTCGTTGCCTTCA 70516 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 |||| || |||||| | |||||||| || ||||| || || | || || || | | Sbjct 70515 CCGACACCGAGCGTCTCATTGGTGACTCGGCAAAGAACCAGGTCGCCATGAACCCTACCA 70456 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTA 349430 | || || || ||||| ||||| || |||||| | ||||| | |||| || Sbjct 70455 ACACCGTCTTCGATGCCAAGCGCCTCATTGGTCGCAAGTTCGCCGATGCTGAGG--TC-- 70400 Query 349431 CACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAA 349490 || | || | || || || || || | || | | | ||| | || || || Sbjct 70399 --CAGGCCGACATGAAGCACTTCCCCTTCAAGGTCAT-CGACAAGGC--TGGCAAGCCTG 70345 Query 349491 TTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAA 349550 | || |||| || | || || || | || ||| ||| || || || ||||| | Sbjct 70344 TCATCCAGGTCGAGTTCAAGGGCGAGGAGAAGACATTCACACCAGAGGAGATCTCATCTA 70285 Query 349551 TGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATG 349610 |||| | ||| |||| ||| | ||| || | || | |||| ||| || | | | Sbjct 70284 TGGTCCTGACTAAGATGAGGGAGACTGCAGAGTCCTACCTCGGTGGAACCGTCAACAACG 70225 Query 349611 CTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTG 349670 |||| | ||||| |||||||| || || || | || ||| || || || ||||||| Sbjct 70224 CTGTCGTCACTGTCCCAGCCTACTTCAACGACTCACAACGTCAGGCCACTAAGGATGCTG 70165 Query 349671 GCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTG 349730 | ||| || || | ||||| || | || || || || || || || || || || | Sbjct 70164 GTCTCATCGCCGGCCTCAATGTCCTCCGTATCATCAACGAGCCTACCGCCGCTGCCATCG 70105 Query 349731 CATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTG 349790 | || || || || || | || | || ||| | || || || || || |||| Sbjct 70104 CCTACGGTCTCGACAAGAAGACCCAGGGTGAGCGCAATGTCCTCATCTTCGACTTGGGTG 70045 Query 349791 GTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAA 349850 |||||||||| ||||| || || | || |||||||||| || || || || || | | Sbjct 70044 GTGGTACTTTCGATGTTTCTCTCTTGACCATTGAAGAGGGTATCTTCGAGGTCAAGTCCA 69985 Query 349851 CTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 |||| ||||| || || | ||||| ||||| || ||||| ||||| || Sbjct 69984 CTGCAGGTGACACTCACTTGGGTGGTGAAGACTTCGATAACCGTCTTGT 69936 >seq1500 Length=44508 Score = 149 bits (164), Expect = 2e-30 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | ||||| || ||||| || || ||||| | Sbjct 4908 TTTGCATACCACCACGCAGACGGAGCACCAAGTGAAGTGTCGACTCCTTCTGGATATTGT 4967 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || |||||||| | || || || |||||||| ||||||||||| | Sbjct 4968 AGTCGGCAAGAGTACGGCCATCTTCCAACTGCTTGCCCGCAAAGATGAGACGTTGCTGGT 5027 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| ||||| || |||||||| || || || || || ||||| | ||| || | Sbjct 5028 CTGGAGGAATACCTTCCTTGTCCTGAATCTTTGCCTTGACGTTGTCAATAGTATCCGAAG 5087 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | |||||||| || ||||| || || || |||||||| Sbjct 5088 ACTCGACCTCCAGCGTGATGGTCTTTCCAGTCAGTGTCTTGACGAAGATCTGCAT 5142 Score = 131 bits (144), Expect = 5e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || ||||| ||||||||||| || ||||| || || || Sbjct 5140 CATACCACCACGCAGACGGAGGACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTC 5199 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | ||||| || || |||||||| ||||| || || || ||||| ||||| || || Sbjct 5200 GGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCCGG 5259 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || || || ||||| || || | || || | || Sbjct 5260 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTC 5319 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||| || || || | ||||||||||| Sbjct 5320 AACCTCGAGGGTTATGGTCTTTCCGGT 5346 Score = 129 bits (142), Expect = 2e-24 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||| ||||||| | || || | || || || ||||| || || || || || Sbjct 4681 TTACTGACCGCCACGTAGACGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTA 4740 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 ||| | | || | || || |||||||| || ||||||||||| ||||| ||||| || Sbjct 4741 ATCGGCAAGCGTCCTGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGCTGCTGGTC 4800 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 |||||| || || || || |||||||| || || ||||| || ||||| | ||| || Sbjct 4801 AGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTTACGTTGTCAATGGTATCGCTTGA 4860 Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || | |||| ||||| ||||| || || || || || || ||||| Sbjct 4861 TTCCACCTCCAAAGTAATCGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 4914 Score = 102 bits (112), Expect = 2e-16 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || ||||| || || || || || || ||||| || | Sbjct 5420 TTTGCATACCACCACGGAGGCGGAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGT 5479 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || || || ||||| || || || || ||||| | ||| ||||| | Sbjct 5480 AGTCGGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGT 5539 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || |||||||| || || || ||||| || || | || || | Sbjct 5540 CTGGTGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCGGAGG 5599 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||||| || || || | ||||| ||||| Sbjct 5600 ACTCAACCTCGAGGGTGATGGTCTTGCCGGT 5630 >seq1513 Length=92312 Score = 96.9 bits (106), Expect = 1e-14 Identities = 135/186 (73%), Gaps = 5/186 (3%) Strand=Plus/Minus Query 377412 AGAAGGATTTTTTGGATTTTCAGATAATGATAATA-TTTCTTCAATGCGTGGCACACCAC 377470 ||||||| |||| ||| ||| |||| | | | |||| | | ||||||||||| Sbjct 82473 AGAAGGAGTTTTGATGTTTGCAGC-AATGTTCAGAATTTCCTTGAGACGTGGCACACCGA 82415 Query 377471 GTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAG 377530 ||||||| ||| || || | ||||||||||| |||||||| || || || | || | Sbjct 82414 GTGTAACGTTC---TTGGAAGACACACCAGCAAAATGGAAAGTGTTGAGCGTCATCTGTG 82358 Query 377531 TAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCTCCAGGATTGACAA 377590 | | ||| |||||||| ||||| ||||||| || || ||||| || ||||| |||| Sbjct 82357 TGGCGGGTTCACCAATGGACTGGGCTGCAAGGACACCGACCATCTCACCAGGCGCGACAG 82298 Query 377591 TAGCCT 377596 ||||| Sbjct 82297 CAGCCT 82292 >seq400 Length=67953 Score = 87.8 bits (96), Expect = 5e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || || | || || || ||||| || || || || || || Sbjct 23245 ATACCACCACGGAGACGGAGGACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCG 23304 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 | | || || ||||| || ||||| ||||| || ||||| || || ||||| || || Sbjct 23305 GCAAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCCGGG 23364 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATC 140668 ||||| ||||| || ||||| || || || || ||||| || Sbjct 23365 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTC 23405 >seq1345 Length=74887 Score = 86.0 bits (94), Expect = 2e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 349781 GATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAA 349840 ||| | |||||||||||||| ||||| || | || || |||| ||||| |||| || Sbjct 24699 GATCTTGGTGGTGGTACTTTCGATGTCTCCATCCTCACCATTGAGGAGGGCGTTTTCGAG 24758 Query 349841 GTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTC 349897 || | || ||||| |||||||| ||||| ||||| || || || ||||| ||| || Sbjct 24759 GTCCAGGCTACTGCCGGTGATACTCATCTCGGTGGTGAGGACTTCGATAACCGTGTC 24815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515222560716920