Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq50 250 3e-61 >seq50 Length=66349 Score = 250 bits (276), Expect = 3e-61 Identities = 519/764 (68%), Gaps = 24/764 (3%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||||| | ||||| ||||| || ||| | | | |||||| || | Sbjct 63736 TCATGCGTGTCGCTGTTGGTATTCACGGCGAGGACATTGAGAAGGCCATTGAGACCTATG 63795 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 ||| ||| ||||| ||||| || |||||| | || || |||||||| || || || Sbjct 63796 ACTACATGTCACAAAAATACTTCACACACGCCTCACCGACACTGTTCAATGCAGGCAC-- 63853 Query 53313 ATCAC---CCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 || | ||||||||||| |||||||| | | |||||||| ||| || |||| Sbjct 63854 -TCCCTCGCCTCAGATGTCTTCATGCTTCCTCATCGATATGAAGGAGGACAGCATTGACG 63912 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 | |||||||| || |||||| |||||| ||||||||| | || ||||| ||| Sbjct 63913 GTATCTACGATACACTCAAGACCTGTGCCTTGATCTCCAAGACCGCTGGCGGTATTGGTC 63972 Query 53430 TCCACTGCT--CGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487 || || | |||| | ||||| | ||| || || || || ||||| | Sbjct 63973 TCAACGTCCACCGAA--TTCGTGCTACTGGCTCATACATTGGTGGCACCAACGGAACATC 64030 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | || || | ||||||||||| || | ||||||||| || || |||||| ||||||| Sbjct 64031 AAACGGTCTCATTCCTATGCTCCGTGTGTACAACAACACTGCTCGCTACGTCGACCAGGG 64090 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 ||| |||||| || | || ||||| ||||| ||||| ||||||||||| | | Sbjct 64091 TGGCAACAAGCGCCCCGGTGCTTTTGCCATTTACCTTGAGCCATGGCACGCCGATGTCTT 64150 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667 | || || || || || ||| || || | || ||| | ||| |||||| ||||| Sbjct 64151 TGGCTTCCTTGATCTCCGCAAGAACCACGGCAAAGAGGAGGTTCGCGCCCGTGATCTGTT 64210 Query 53668 -TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGT 53726 ||| ||||||||||| || || || |||||| | || || || ||| ||||||| Sbjct 64211 CTAC-GCTCTGTGGATCCCCGATCTGTTCATGAAGCGTGTCCAGGAGAACGGGGAGTGGA 64269 Query 53727 ACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACG 53786 || |||||||| |||||||||||||||||| | ||||||||||| |||||| | | Sbjct 64270 CTCTCATGTGCCCCAACGAGTGCCCCGGCCTCGCTGACGTCTACGGTGATGAGTTTGAGG 64329 Query 53787 AGATGTATCGGACGTAC-----GCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGGCGC 53840 |||| || ||| |||| | ||||||| ||| | ||| || | Sbjct 64330 CTCTGTACGAGAGCTACGAGAAGCAGAACAAGGGCCG-----TGAA-ACTGTCCGCGCCC 64383 Query 53841 GTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCT 53900 || | ||| | || |||||| | |||| || || || | || | ||| || Sbjct 64384 AGAAGCTGTGGTACGCCATCCTCGAAGCCCAGACCGAAACTGGTAACCCCTTTATGCTCT 64443 Query 53901 ACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944 |||||||| | |||| |||||||||||||||||| | ||| Sbjct 64444 ACAAGGATGCTTGCAACCGTAAGAGCAACCAGAAGAACTTGGGC 64487 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 55775 ATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTC 55834 ||| | ||| |||||| |||||||| | ||| || ||||| ||||| |||||||| | Sbjct 65301 ATTCAGATGGCTGCTGACCGTGGTGCTTTCATTGATCAGTCACAGTCGCTGAACATTCAC 65360 Query 55835 ATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGA 55894 ||| || | || | ||| |||| | | ||||||||||||| ||| |||||| || Sbjct 65361 ATGAAGGAGCCAACCATGGGCAAGATCACCTCGATGCACTTTGCCGGATGGAAGCTTGGT 65420 Query 55895 CTCAAGACGGGTATGTACTATCTGCGGACC 55924 |||||||| || |||||||| || || ||| Sbjct 65421 CTCAAGACCGGCATGTACTACCTCCGCACC 65450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547204782072000