Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq50 248 1e-60 seq1500 190 2e-43 seq400 122 1e-22 seq1257 98.7 1e-15 seq193 87.8 2e-12 >seq50 Length=66349 Score = 248 bits (274), Expect = 1e-60 Identities = 1114/1740 (64%), Gaps = 55/1740 (3%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || || ||||||||||| |||||||| || |||||| ||| | |||||| || Sbjct 65449 GTGCGGAGGTAGTACATGCCGGTCTTGAGACCAAGCTTCCATCCGGCAAAGTGCATCGAG 65390 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| ||| | | || || | || |||| |||||||| ||||| |||||| ||| Sbjct 65389 GTGATCTTGCCCATGGTTGGCTCCTTCATGTGAATGTTCAGCGACTGTGACTGATCAATG 65330 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTA 80217 ||||| ||||| || || ||||| | ||| || | || | |||||||| || || Sbjct 65329 AAAGCACCACGGTCAGCAGCCATCTGAATGATGGTTCGCTGCGAGATTTCCCAAACGGTC 65270 Query 80218 CGATACACCTTACGAAGCTCCTCTGGAATGTCCAG-ATT-TTGCACACTG--CCACCGTC 80273 || | | | |||||| || |||| | ||| ||||| | | ||||| || Sbjct 65269 TTGTAGAGCGTCTTGGTCTCCTCAGGGATGTTGGGGATTCTTGCA-ATGGAACCACCCTC 65211 Query 80274 CTTTACAATTTGATTTTTCAA-TTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTTCA 80332 | ||| | || |||| ||| | | ||| | || | | | ||||| || | Sbjct 65210 GGCAATAATGCGGTTCTTCATGTTCTCA-GACCACAGGCCCATGTCGACGAGATCCTTGA 65152 Query 80333 CAAGGT---GCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGA-TACAGG 80388 || | ||| || | || |||| |||||||| || || ||| || | | Sbjct 65151 GCAGCCATGGGTTGACAACCTGGA---ACTCACCCGCGAGCACACGTCG-AGAGTAGATG 65096 Query 80389 TTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTC 80448 || | ||||| ||||| || |||||||||||||| ||||| | || || || Sbjct 65095 TTAGATGTGTACGGCTCGAAGCATTCGTTGTTTCCGAGAATCTGGGAGGTCGAGGCAGTT 65036 Query 80449 GGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGAT--ATCCTCGCG-- 80504 ||||| || ||| ||||| || || || | || || |||| ||| | || Sbjct 65035 GGCATGGGAGCGATCAACAAAGAGTTGCGTACACCATG----TTGAGCAATCTTGGCCTT 64980 Query 80505 CAAATCTGACCAAAAATCAACCCCAA--CGCTG----TGACC--CCACATGTCGTGCTGC 80556 ||| |||| ||| || || | || || |||| |||||| |||| ||| Sbjct 64979 CAACTCTGCCCAG---TC--CCAGAGGTCGGTGGGGGTGACGTTCCACATATCGTACTGA 64925 Query 80557 AAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCC 80616 | | | |||| || | ||||| ||| || | ||||| || || || | |||||| Sbjct 64924 AGGGTTCCCTGAGAAACGGGAGATCCCTCGTAGGTCTCATATGGACCAAGCTCCTTGGCA 64865 Query 80617 AGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCA-C 80675 | || || || |||| || ||||| || ||| ||| |||| |||| | | Sbjct 64864 ATGTCGCAGGAAGAAGTAAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGC 64805 Query 80676 ACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCC 80735 | | |||| || ||||| | || || || | ||| | || ||||| || Sbjct 64804 TTCTTG-GCCTCTGCCGACTCGAAAGGCAGGCGCAATGCGAGGAAAGCATCGGCCAGACC 64746 Query 80736 CTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGG 80795 || ||||| || |||| || ||||| || ||| || |||||| || || Sbjct 64745 TTGTACGCCCATACCGATAGGTCGGTGACGGAAGTTGCTGCGGCGTGCCTCCTCAACGGG 64686 Query 80796 GTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATG 80855 ||| ||| || |||| ||||| |||||| || |||||| | || || || || Sbjct 64685 GTAGTGGTTGACTTCAATGATCTTGTTCAAGTTGCGGGTGACAACCTGGGTGACCTCGTG 64626 Query 80856 AAGTTTCTGAAAGTCGAATTGGTTCCCCTTC------ACAAATGCCGGAAGGCTCAGGGA 80909 ||| ||||| ||||| || | | | ||| ||||| | || ||| || || Sbjct 64625 AAGCTTCTGGAAGTCAAACTCGCCACGCTTGTAGTCAACAAAAGAGGGCAGGGCAAGAGA 64566 Query 80910 CGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAA 80969 || |||||||| || || ||||| |||| | || ||||||| || |||||||||| Sbjct 64565 AGCAAGATTGCAAACAGCAACCTCATCAGGGGCAGTGTACTCGACAATCTCCGTGCACAG 64506 Query 80970 ATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTT 81029 || || || || |||| ||| |||||||| ||| ||||||||| ||||| Sbjct 64505 GTTGGAGCTACGGATAGTGCCCAAGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCTT 64446 Query 81030 GTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTC 81089 |||| ||| | ||| |||| || ||| ||| | | ||||||||||| ||| | || Sbjct 64445 GTAGAGCATAAAGGGGTTACCAGTTTCGGTCTGGGCTTCGAGGATGGCGTACCACAGCTT 64386 Query 81090 GCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGC--CACATACTTGGCGTAAGCTTCG 81147 | || ||| | ||| ||| ||| || | | || | |||| | Sbjct 64385 CTGGGCGCGGACAGTTTCACGGCCCTTG--TTCTGCTTCTCGTAGCTCTCGTACAGAGCC 64328 Query 81148 TCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGC 81207 || |||| |||||| | |||| |||| | ||||||||||| |||||||| || | Sbjct 64327 TCAAACTCATCACCGTAGACGTCAGCGAGGCCGGGGCACTCGTTGGGGCACATGAGAGTC 64268 Query 81208 CAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAAC 81267 || || || | || ||| ||||||||| || |||||||| || ||| |||| Sbjct 64267 CACTCCCCGTTCTCCTGGACACGCTTCATGAACAGATCGGGGATCCACAGAGCGTAGAAC 64208 Query 81268 AGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATG 81327 || || ||| ||| ||||||| | || ||||| ||| | || || ||| | | | Sbjct 64207 AGATCACGGGCGCGAACCTCCTCTTTGCCGTGGTTCTTGCGGAGATCAAGGAAGCCAAAG 64148 Query 81328 ATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCC 81384 | || || ||||||||||| || || | ||| | | || ||| ||||||| Sbjct 64147 ACATCGGCGTGCCATGGCTCAAGGTAAATGGCAAAAGCACCGGGGCGCTTGTTGCCACCC 64088 Query 81385 TGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGAC 81444 |||| |||||| || ||||| ||| | ||||| | |||||| |||| ||| | ||| Sbjct 64087 TGGTCGACGTAGCGAGCAGTGTTGTTGTACACACGGAGCATAGGAATGAGACCGTTTGAT 64028 Query 81445 TGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGAC 81502 ||||| || || | || || || | || || | | || ||| |||| Sbjct 64027 GTTCCGTTGGTGCCACCAATGTATGAGCCAGTAGCACGAATTCGGTGGACGTTG--AGAC 63970 Query 81503 CGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCT 81562 | || || || | ||| || ||| ||||| || | || || || || || | Sbjct 63969 CAATACCGCCAGCGGTCTTGGAGATCAAGGCACAGGTCTTGAGTGTATCGTAGATACCGT 63910 Query 81563 CGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGC 81622 | ||||| || | ||||| || | | ||| || ||||||||||| | || Sbjct 63909 CAATGCTGTCCTCCTTCATATCGATGAGGAAGCATGAAGACATCTGAGGCGAGGGAGTGC 63850 Query 81623 CGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGG 81682 | |||||||||||||| || | ||||| |||| || | |||||| |||||||| Sbjct 63849 CTGCATTGAACAGTGTCGGTGAGGCGTGTGTGAAGTATTTTTGTGACATGTAGTCATAGG 63790 Query 81683 TTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGT 81742 | || || | ||| || || ||||||||||| | ||| |||||||| | ||||| Sbjct 63789 TCTCAATGGCCTTCTCAATGTCCTCGCCGTGAATACCAACAGCGACACGCATGAGCATGT 63730 >seq1500 Length=44508 Score = 190 bits (210), Expect = 2e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||||||||| |||||| | ||||| || ||| | Sbjct 4914 ATGCAAATCTTCGTCAAGACTCTCACCGGCAAGACGATTACTTTGGAGGTGGAATCAAGC 4855 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || | ||||| || ||||||||||||||||| || ||||| |||||| Sbjct 4854 GATACCATTGACAACGTAAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAG 4795 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||||||||||||||| ||||| | | || || || || || || Sbjct 4794 CAGCGTCTCATCTTTGCTGGTAAGCAACTTGAGGACGGCAGGACGCTTGCCGATTACAAC 4735 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| ||||| || || | || | ||||| || || || || Sbjct 4734 ATCCAGAAGGAGTCCACGCTCCACTTGGTGCTCCGTCTACGTGGCGGTCA 4685 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| || || || ||||| ||||| Sbjct 5142 ATGCAGATCTTCGTCAAGACACTGACTGGAAAGACCATCACGCTGGAGGTCGAGTCTTCG 5083 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | ||||| || |||||||||||||| || ||||||||||||||| Sbjct 5082 GATACTATTGACAACGTCAAGGCAAAGATTCAGGACAAGGAAGGTATTCCTCCAGACCAG 5023 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||| || ||||| | || |||| ||||| || || ||||| ||| Sbjct 5022 CAACGTCTCATCTTTGCGGGCAAGCAGTTGGAAGATGGCCGTACTCTTGCCGACTACAAT 4963 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| | || | ||||| || ||||| Sbjct 4962 ATCCAGAAGGAGTCGACACTTCACTTGGTGCTCCGTCTGCGTGGTGG 4916 Score = 159 bits (176), Expect = 4e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| ||||| || || || ||||||||||| || | ||| | ||| | ||||| Sbjct 5346 ACCGGAAAGACCATAACCCTCGAGGTTGAGTCCTCCGACACCATCGACAATGTCAAGGCC 5287 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| ||||| || |||||||||||||| ||||| || || ||| Sbjct 5286 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATTTTCGCCGGAAAG 5227 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||| ||||| | || ||||| || ||||| || | || ||||| || ||||| ||| Sbjct 5226 CAACTTGAGGACGGCCGAACCCTTGCCGACTACAACATTCAGAAGGAGTCTACTCTGCAT 5167 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | ||||| || ||||| Sbjct 5166 CTCGTCCTCCGTCTGCGTGGTGG 5144 Score = 150 bits (166), Expect = 2e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || || ||||||||||| || | ||| | ||| | ||||| Sbjct 5630 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACCATCGACAATGTCAAGGCG 5571 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||||||||||||||| || || ||||||||||||||| | || || || || ||| Sbjct 5570 AAGATTCAGGACAAGGAGGGCATCCCACCAGACCAGCAGCGTTTGATCTTCGCCGGCAAG 5511 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||| | || ||||| || ||||| || | || ||||||||||| || || Sbjct 5510 CAGCTTGAGGACGGCCGCACCCTTGCCGACTACAACATTCAGAAGGAATCCACCCTCCAC 5451 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || || || ||||| Sbjct 5450 CTTGTCCTCCGCCTCCGTGGTGG 5428 >seq400 Length=67953 Score = 122 bits (134), Expect = 1e-22 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||||| || || ||||||||||| || ||||| || ||||||||||| || || Sbjct 23402 AATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAGCAGCGCCTGATC 23343 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || |||||||||||||||| || ||||| || ||||| || |||| ||||| Sbjct 23342 TTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTTGCCGACTACAACATCCAGAAGGAG 23283 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || | ||| | ||||| || ||||| Sbjct 23282 TCAACACTCCACTTGGTCCTCCGTCTCCGTGGTGG 23248 >seq1257 Length=334001 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| ||||| || |||||||||||||| || || || || ||||| |||||| Sbjct 8787 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAG 8846 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | || || || || ||||| || |||| ||||| || || || || | || | Sbjct 8847 GACGGCCGCACTCTTGCCGACTACAACATCCAGAAGGAGTCGACCCTCCACTTGGTGCTC 8906 Query 27619 CGTCTTCGCGGTGG 27632 ||||| || ||||| Sbjct 8907 CGTCTCCGTGGTGG 8920 >seq193 Length=97280 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/184 (71%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 30379 ATTTTTGGGCACCTTTTGACAAGCTCCAACTACAACGACGAGGAGCAGCGCGTGACGGGT 30438 |||||||| |||||| | || |||||||| ||||||| | || || |||||| Sbjct 55594 ATTTTTGGTCACCTTCTCACCTCGTCCAACTATGACGACGACCAACAAAAAGTCACGGGT 55535 Query 30439 GGACGAAATGGCTACGGTGCAAAGCTCGCCAACGTTTTCAGTTCCCTATTCAAAATCAA- 30497 ||||| || || ||||| || |||||| ||||| |||||| || ||||| | || | Sbjct 55534 GGACGCAACGGTTACGGAGCTAAGCTCTGTAACGTATTCAGTACCGAATTCACAGTCGAG 55475 Query 30498 ------AATTAGTGACGGGAAGAAGATATATGAGCAGACTTGGACAGATAACATGAGCAA 30551 ||| | || |||||||| || |||| || ||||| || ||||||||||| Sbjct 55474 ACCGTCGATTCGAAAC-AGAAGAAGAAGTACAAGCAAACATGGACGGAGAACATGAGCAA 55416 Query 30552 GGTG 30555 | || Sbjct 55415 GATG 55412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570298708636800