Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1500 161 2e-34 seq400 118 2e-21 seq50 105 2e-17 >seq1500 Length=44508 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| || ||||| || ||||| || || || ||||| || | |||||| Sbjct 4931 AGCACCAAGTGAAGTGTCGACTCCTTCTGGATATTGTAGTCGGCAAGAGTACGGCCATCT 4990 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| || ||||| || ||||| ||||| ||||||| |||||||||||| Sbjct 4991 TCCAACTGCTTGCCCGCAAAGATGAGACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCC 5050 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| || ||||| || || || || || || ||||| || ||||| ||| Sbjct 5051 TGAATCTTTGCCTTGACGTTGTCAATAGTATCCGAAGACTCGACCTCCAGCGTGATGGTC 5110 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || ||||| || || | |||||| Sbjct 5111 TTTCCAGTCAGTGTCTTGACGAAGATCTGCAT 5142 Score = 150 bits (166), Expect = 4e-31 Identities = 163/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || |||||||| || |||||||| ||||| ||||| ||||| || || Sbjct 4703 AGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCAAGCGTCCTGCCGTCC 4762 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || || ||||| || || || ||||||||||| | || ||||||||| Sbjct 4763 TCAAGTTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 4822 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 || ||||| || ||||| || ||||| || ||| ||| ||||| | ||| ||| Sbjct 4823 TGAATCTTCGCCTTTACGTTGTCAATGGTATC---GCTTGATTCCACCTCCAAAGTAATC 4879 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||||||||| || || | ||||| Sbjct 4880 GTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 4914 Score = 149 bits (164), Expect = 1e-30 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || ||||| || || || ||||| || || |||||||| | || || Sbjct 5443 AGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCGTCC 5502 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | || || ||||| || || | || ||||||||| Sbjct 5503 TCAAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCC 5562 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||||||||| ||| ||||||||||| ||||| ||| Sbjct 5563 TGAATCTTCGCCTTGACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTC 5622 Query 211083 TTTCCCGTGA 211092 || || |||| Sbjct 5623 TTGCCGGTGA 5632 Score = 145 bits (160), Expect = 2e-29 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || ||||| ||||| || || ||||| || || |||||||| | || || Sbjct 5159 AGGACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCC 5218 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || ||||| || || || || ||||| || |||| || ||||||||| Sbjct 5219 TCAAGTTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 5278 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| ||| ||||||||||| || || ||| Sbjct 5279 TGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTTATGGTC 5338 Query 211083 TTTCCCGTGA 211092 ||||| |||| Sbjct 5339 TTTCCGGTGA 5348 >seq400 Length=67953 Score = 118 bits (130), Expect = 2e-21 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || || ||||| || |||||||| || || |||||||| | ||||| Sbjct 23263 AGGACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCC 23322 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || |||||||| ||||| || ||||| || |||| |||||||||||| Sbjct 23323 TCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCC 23382 Query 211023 TGGATCTT 211030 |||||||| Sbjct 23383 TGGATCTT 23390 >seq50 Length=66349 Score = 105 bits (116), Expect = 2e-17 Identities = 196/283 (69%), Gaps = 10/283 (4%) Strand=Plus/Minus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144 || |||||||| ||||||||||| | ||||| ||||| ||||| || ||||| Sbjct 64486 CCCAAGTTCTTCTGGTTGCTCTTACGGTTGCAA---GCATCCTTGTAGAGCATAAAGGGG 64430 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 | || || | || || |||| ||| | ||| |||| |||||| |||||||| Sbjct 64429 TTACCAGTTTCGGTCTGGGCTTCGAGGATGGCGTACCACAGCTTCTGGGCGCGGACAGT- 64371 Query 178205 TTTTTGG--CTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCAT 178262 || || ||| | || | |||||||| | | ||| || |||| || || || | Sbjct 64370 TTCACGGCCCTTGTTCTGC-TTCTCGTAGCTCTCGTACAGAGCCTCAAACTCATCACCGT 64312 Query 178263 AGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCT 178322 |||| ||| |||| ||||| ||| |||||||| | |||| |||||| |||| |||| Sbjct 64311 AGACGTCAGCGAGGCCGGGGCACTCGTTGGGGCACATGAGAGTCCACTCCCCGTTCTCCT 64252 Query 178323 TCACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 || || |||||||| || || | | |||| | || ||||| Sbjct 64251 GGACACGCTTCATGAACAGATCGGGGATCCACAGAGCGTAGAA 64209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159127643318600