Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1500 107 2e-18 >seq1500 Length=44508 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || |||||| ||| || || || || ||||||||||| || | |||| || Sbjct 4705 CACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCAAGCGTCCTGCCGTCCTC 4764 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||| || || || ||||| || |||||||||||||| | || | | ||| |||||| Sbjct 4765 AAGTTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTG 4824 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || ||| || | ||| | | | |||||||| || ||||| |||| || || | | Sbjct 4825 AATCTTCGCCTTTA-CGTTGTCAATGGTATCGCTTGATTCCACCTCCAAAGTAATCGTCT 4883 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || || ||||||||||| Sbjct 4884 TGCCGGTGAGAGTCTTGACGAAGATTTGCAT 4914 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || || ||| || || ||||| || |||||||| || || | || || Sbjct 4933 CACCAAGTGAAGTGTCGACTCCTTCTGGATATTGTAGTCGGCAAGAGTACGGCCATCTTC 4992 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 | ||| ||||||||||| || ||||| |||||||| | || | | || |||||| | Sbjct 4993 CAACTGCTTGCCCGCAAAGATGAGACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCC-T 5051 Query 39195 GATTTTCTG-TTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 || | | || |||| ||| | | | ||||| ||||| || |||| |||||| | Sbjct 5052 GAATCTTTGCCTTGA-CGTTGTCAATAGTATCCGAAGACTCGACCTCCAGCGTGATGGTC 5110 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| ||||| || || || ||||| ||||| Sbjct 5111 TTTCCAGTCAGTGTCTTGACGAAGATCTGCAT 5142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429537014457320