Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1500 127 5e-24 seq400 100 7e-16 >seq1500 Length=44508 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||||||||| |||||||| || || | ||||| ||||| | || | || || Sbjct 5443 AGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCGTCC 5502 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| | || || ||||| || || || || |||||||| Sbjct 5503 TCAAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCC 5562 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| ||||||||||| |||| || || || | ||||| ||| Sbjct 5563 TGAATCTTCGCCTTGACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTC 5622 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 5623 TTGCCGGT 5630 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| ||||| || || |||| ||||||||||| | || || || || Sbjct 4703 AGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCAAGCGTCCTGCCGTCC 4762 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| ||||| ||||| || || || ||||| || || ||||| |||||||| Sbjct 4763 TCAAGTTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 4822 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || || ||||| || | |||||| || || || |||||| Sbjct 4823 TGAATCTTCGCCTTTACGTTGTCAATGGTATCGCTTGATTCCACCTCCAAAGTAATCGTC 4882 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||| || | ||| | |||||| Sbjct 4883 TTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 4914 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || || || |||| |||||| ||||| | ||| | |||||| Sbjct 4931 AGCACCAAGTGAAGTGTCGACTCCTTCTGGATATTGTAGTCGGCAAGAGTACGGCCATCT 4990 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| || || ||||| || ||||| ||||| || ||||||||||||||||| Sbjct 4991 TCCAACTGCTTGCCCGCAAAGATGAGACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCC 5050 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||| ||| || || || || || || | || || || | |||||| ||| Sbjct 5051 TGAATCTTTGCCTTGACGTTGTCAATAGTATCCGAAGACTCGACCTCCAGCGTGATGGTC 5110 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||| || || | ||| | ||||| Sbjct 5111 TTTCCAGTCAGTGTCTTGACGAAGATCTGCAT 5142 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || || ||||| || || || || | ||||| ||||| | |||| || || Sbjct 5159 AGGACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCC 5218 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || ||||| || || || || ||||| || ||||| || |||||||| Sbjct 5219 TCAAGTTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 5278 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| |||| || || || | || || ||| Sbjct 5279 TGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTTATGGTC 5338 Query 225682 TTGCCCGT 225689 || || || Sbjct 5339 TTTCCGGT 5346 >seq400 Length=67953 Score = 100 bits (110), Expect = 7e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| || || || || |||| ||||| ||||| | || | ||||| Sbjct 23263 AGGACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCC 23322 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| || || || ||||| || ||||| ||||||||||| Sbjct 23323 TCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCC 23382 Query 225622 TGGATCTT 225629 |||||||| Sbjct 23383 TGGATCTT 23390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192506141938160