Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq50 152 7e-32 >seq50 Length=66349 Score = 152 bits (168), Expect = 7e-32 Identities = 407/615 (66%), Gaps = 8/615 (1%) Strand=Plus/Minus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 ||||| ||||| || | || ||| | | || || || || || || ||||| | | | Sbjct 64327 TCAAACTCATCACCGTAGACGTCAGCGAGGCCGGGGCACTCGTTGGGGCACATGAGAGTC 64268 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 ||||| || | |||| || || ||||| || ||||| || ||||| ||||| || Sbjct 64267 CACTCCCCGTTCTCCTGGACACGCTTCATGAACAGATCGGGGATCCACAGAGCGTAGAAC 64208 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 ||||| |||| | | || || || || ||||| ||||| ||||| | | Sbjct 64207 AGATCACGGGCGCGAACCTCCTCTTTGCCGTGGTTCTTGCGGAGATCAAGGAAGCCAAAG 64148 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759 | ||| | |||||||| || || || || || | | |||| || || || || || ||| Sbjct 64147 ACATCGGCGTGCCATGGCTCAAGGTAAATGGCAAAAGCACCGGGGCGCTTGTTGCCACCC 64088 Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819 || || | || | |||||||| || || || | | ||| ||||| | ||||| ||| Sbjct 64087 TGGTCGACGTAGCGAGCAGTGTTGTTGTACACACGGAGCATAGGAATGAGACCGTTTGAT 64028 Query 76820 GTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT-AGGCC 76878 || || || || ||| ||| || ||| |||||||| | | | | || || Sbjct 64027 GTTCCGTTGGTGCCACCAATGTATGAGCCAGTAGCACGAAT-TCGGTGGACGTTGAGACC 63969 Query 76879 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTC 76938 || || || || | || ||||| | |||||| || | ||| || ||||| || || Sbjct 63968 AATACCGCCAGCGGTCTTGGAGATCAAGGCACAGGTCTTGAGTGTATCGTAGATACCGTC 63909 Query 76939 TATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 76998 || || || ||| |||| | | || || || |||||| ||| | ||| || Sbjct 63908 AATGCTGTCCTCCTTCATATCGATGAGGAAGCATGAAGACATCTGAGGCGAGGGAGTGCC 63849 Query 76999 TGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAA-GTAGATTGTATG 77057 |||||| |||| ||| || || || || ||||| |||||| || | |||| | || | Sbjct 63848 TGCATTGAACAGTGTCGGTGAGGCGTGTGTGAAGTATTTTTGTGACATGTAG-TCATAGG 63790 Query 77058 TTTCAATAACTGCTTCTATATCCCATTGA--TGAATTCCTACAGCGACACGCATCAACAT 77115 | ||||| | ||||| || | | | ||||| || |||||||||||||| | ||| Sbjct 63789 TCTCAATGGC--CTTCTCAATGTCCTCGCCGTGAATACCAACAGCGACACGCATGAGCAT 63732 Query 77116 ATGCTGAGGTCGTTC 77130 || || || || || Sbjct 63731 GTGTTGCGGACGCTC 63717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712919784844800