Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1500 100 7e-16 seq400 86.0 1e-11 >seq1500 Length=44508 Score = 100 bits (110), Expect = 7e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| ||||| ||||||||||| || || |||||||| ||||| | |||| || || Sbjct 5158 GAGGACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTC 5217 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| |||||||| || || | ||||||||||| | || || ||||| Sbjct 5218 CTCAAGTTGCTTT--CCGGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTG 5275 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || || || || |||||| | || | | |||| || ||| || || || || || Sbjct 5276 TCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTTATG 5335 Query 152070 GTTTTGCCCGTGA 152082 || || || |||| Sbjct 5336 GTCTTTCCGGTGA 5348 Score = 95.1 bits (104), Expect = 3e-14 Identities = 149/211 (71%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || ||||||||||||||||| | || || || || || | Sbjct 4708 CAAG-TGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCAAGCGTCCTGCCGTCCTCAA 4766 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| || | ||||||||| | | ||| || ||||| || |||| Sbjct 4767 GTTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGAA 4826 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGAGTAATAGTTT 152073 | || || || | || | | | || ||| || || || | |||||| || | Sbjct 4827 TCTTCGCCTTTACGTTGTCAATGGTATCGCTTGA---TTCCACCTCCAAAGTAATCGTCT 4883 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| ||||||||||| ||||||| ||||| Sbjct 4884 TGCCGGTGAGAGTCTTGACGAAGATTTGCAT 4914 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||||||||| || || || || || || || |||||||| ||||| | || | Sbjct 5436 GAGGCGGAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCG 5495 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || ||||||||||| | | ||||||||| | | ||| || || Sbjct 5496 GCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCTGGTGGGATGCCCTC 5555 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || |||||| | || | | |||| || ||| || || || || Sbjct 5556 CTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGT 5615 Query 152066 AATAGTTTTGCCCGTGA 152082 || || ||||| |||| Sbjct 5616 GATGGTCTTGCCGGTGA 5632 >seq400 Length=67953 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/153 (73%), Gaps = 4/153 (3%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | || || || ||||| || ||||||||||| ||||| | || | Sbjct 23256 GAGACGGAGGACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCG 23315 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||| ||||||||||| || | ||||||||||| | || ||| Sbjct 23316 GCCATCCTCGAGTTGCTTT--CCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCT 23373 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 ||||| || || || || |||||| | ||| Sbjct 23374 TCCTTGTCCTGGATCTTGGCCTTGACATTGTCT 23406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153796555340440