Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1500 172 1e-37 seq400 118 2e-21 seq1363 109 1e-18 seq1257 102 2e-16 >seq1500 Length=44508 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || |||| || | || || || ||||| |||||||| || Sbjct 4915 ACCACCACGCAGACGGAGCACCAAGTGAAGTGTCGACTCCTTCTGGATATTGTAGTCGGC 4974 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || |||||||| || | || || || |||||||| | |||||| ||||| || Sbjct 4975 AAGAGTACGGCCATCTTCCAACTGCTTGCCCGCAAAGATGAGACGTTGCTGGTCTGGAGG 5034 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| |||||||| || |||||||| || ||| | || ||||| ||||||| ||||| Sbjct 5035 AATACCTTCCTTGTCCTGAATCTTTGCCTTGACGTTGTCAATAGTATCCGAAGACTCGAC 5094 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 5095 CTCCAGCGTGATGGTCTTTCCAGTCAGTGTCTTGACGAAGATCTGCAT 5142 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || |||| || | |||| || || ||||||||||| || || Sbjct 4687 ACCGCCACGTAGACGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGC 4746 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||| | ||| ||||| ||||| || || |||||||| | ||| || |||||| || Sbjct 4747 AAGCGTCCTGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGG 4806 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| || ||||| || |||||| | || || || || | ||| || Sbjct 4807 GATACCCTCCTTGTCCTGAATCTTCGCCTTTACGTTGTCAATGGTATCGCTTGATTCCAC 4866 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||| |||||||| || || | |||||| ||||| || ||||| Sbjct 4867 CTCCAAAGTAATCGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 4914 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||| ||| || || ||||||||||| || Sbjct 5427 ACCACCACGGAGGCGGAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGC 5486 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| || || || ||||| ||||||||||| || ||||| || Sbjct 5487 AAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCTGGTGG 5546 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| || || || | ||||| ||||| || | || || Sbjct 5547 GATGCCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCGGAGGACTCAAC 5606 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||| ||||| || || Sbjct 5607 CTCGAGGGTGATGGTCTTGCCGGT 5630 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || || ||||| | || || || || ||||||||||| || Sbjct 5143 ACCACCACGCAGACGGAGGACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGC 5202 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| ||||| ||||| || ||||| || |||| ||| || ||||| || Sbjct 5203 AAGGGTTCGGCCGTCCTCAAGTTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCCGGGGG 5262 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| || || || | ||||| ||||| || | || || Sbjct 5263 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCAAC 5322 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||||| || || ||||| || || Sbjct 5323 CTCGAGGGTTATGGTCTTTCCGGT 5346 >seq400 Length=67953 Score = 118 bits (130), Expect = 2e-21 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | || || || |||||||||||||| || Sbjct 23247 ACCACCACGGAGACGGAGGACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCGGC 23306 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||||||||| ||||| || ||||| ||||||| || || ||||| || Sbjct 23307 AAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 23366 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024 ||| || |||||||| |||||||| || || || Sbjct 23367 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC 23399 >seq1363 Length=52244 Score = 109 bits (120), Expect = 1e-18 Identities = 173/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222 ||| |||| || | ||||| | ||| | |||||| || ||||||| | || ||| | Sbjct 38650 ATCATCACCGAGGCTGTTGCCATTGAGCAAGAGTTCCTTAGCGACGCCCTGCCATGCGCT 38709 Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 | |||||||||| || | |||||| | || || || || ||||| ||||| ||| | Sbjct 38710 TTGCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATTGAGTTCGTTGCTGACCGTCTG 38769 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 | | || || || || || || || || ||| ||||||||||| || |||||| Sbjct 38770 CTTCTCGCTCTGGGCAACACCAAGGTCTACCACGCCACGAACCCCTTCGACTTCATGGAG 38829 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGG 230402 ||| || || || || || ||||||||||| ||||||||| | || || || | | Sbjct 38830 AACATCTCGCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAGAAG 38889 Query 230403 CCCGGTGT 230410 | ||||| Sbjct 38890 GCTGGTGT 38897 >seq1257 Length=334001 Score = 102 bits (112), Expect = 2e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | || || || |||||||||||||| || Sbjct 8921 ACCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 8862 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| || || || ||||| ||||| | ||| || ||||| || Sbjct 8861 AAGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 8802 Query 282992 AATACCCTCCTTGTCTTGG 283010 ||| |||||||||||| || Sbjct 8801 AATGCCCTCCTTGTCTGGG 8783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046717205392560