Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1500 145 2e-29 seq400 116 9e-21 seq1257 96.9 8e-15 >seq1500 Length=44508 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || ||||| || ||||| || ||||| || || || Sbjct 5139 CAGATCTTCGTCAAGACACTGACTGGAAAGACCATCACGCTGGAGGTCGAGTCTTCGGAT 5080 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||||||||||||| ||||| || ||||| ||||||||| Sbjct 5079 ACTATTGACAACGTCAAGGCAAAGATTCAGGACAAGGAAGGTATTCCTCCAGACCAGCAA 5020 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||| | |||||||| | ||||||||||| || || || Sbjct 5019 CGTCTCATCTTTGCGGGCAAGCAGTTGGAAGATGGCCGTACTCTTGCCGACTACAATATC 4960 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || ||||| || |||| Sbjct 4959 CAGAAGGAGTCGACACTTCA-CTTG 4936 Score = 143 bits (158), Expect = 6e-29 Identities = 158/208 (76%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--- 177980 ||||| ||||| || |||||||| || || ||||| || | ||||||||| ||| Sbjct 4911 CAAATCTTCGTCAAGACTCTCACCGGCAAGACGATTACTTTGGAGGTGGAA---TCAAGC 4855 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || ||||| || ||||| || |||||||||||||| || || |||||||| |||||| Sbjct 4854 GATACCATTGACAACGTAAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAG 4795 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||| || || || || || || || || ||||| ||||||||||| ||| Sbjct 4794 CAGCGTCTCATCTTTGCTGGTAAGCAACTTGAGGACGGCAGGACGCTTGCCGATTACAAC 4735 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || || || || || |||| Sbjct 4734 ATCCAGAAGGAGTCCACGCTCCA-CTTG 4708 Score = 143 bits (158), Expect = 6e-29 Identities = 144/187 (77%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||||||||| || ||| ||||||||||| || ||||| Sbjct 5632 TCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACCATCGACAATGTCAAGG 5573 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 |||||||||||||| || || ||||| || |||||||| || | ||||||||||| | Sbjct 5572 CGAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAGCAGCGTTTGATCTTCGCCGGCA 5513 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| || || || | || |||||||| || ||| | || || ||||| || || | Sbjct 5512 AGCAGCTTGAGGACGGCCGCACCCTTGCCGACTACAACATTCAGAAGGAATCCACCCTCC 5453 Query 178123 ATCTTGT 178129 | ||||| Sbjct 5452 ACCTTGT 5446 Score = 140 bits (154), Expect = 8e-28 Identities = 143/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| ||||| || || ||||||||||| || ||| ||||||||||| || ||||| Sbjct 5348 TCACCGGAAAGACCATAACCCTCGAGGTTGAGTCCTCCGACACCATCGACAATGTCAAGG 5289 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || || || || ||||||||||| || || || |||||||||| Sbjct 5288 CCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATTTTCGCCGGAA 5229 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | || || || || || | || |||||||| || ||| | || || || || || |||| Sbjct 5228 AGCAACTTGAGGACGGCCGAACCCTTGCCGACTACAACATTCAGAAGGAGTCTACTCTGC 5169 Query 178123 ATCTTGT 178129 |||| || Sbjct 5168 ATCTCGT 5162 >seq400 Length=67953 Score = 116 bits (128), Expect = 9e-21 Identities = 101/124 (81%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| ||||| || || ||||||||||| || || |||||||||||||| Sbjct 23390 AAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGAAAG 23331 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||||| ||||| | || |||||||| || ||| |||| || || |||||||| || Sbjct 23330 CAACTCGAGGATGGCCGCACCCTTGCCGACTACAACATCCAGAAGGAGTCAACACTCCA- 23272 Query 178125 CTTG 178128 |||| Sbjct 23271 CTTG 23268 >seq1257 Length=334001 Score = 96.9 bits (106), Expect = 8e-15 Identities = 91/115 (79%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| || || || || ||||||||||| || || |||||||||||||| |||||||| Sbjct 8787 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAG 8846 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || || | ||||||||||| || ||| |||| || || || || || || |||| Sbjct 8847 GACGGCCGCACTCTTGCCGACTACAACATCCAGAAGGAGTCGACCCTCCA-CTTG 8900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203705906598160