Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1500 125 7e-24 seq1257 118 1e-21 seq400 114 1e-20 >seq1500 Length=44508 Score = 125 bits (138), Expect = 7e-24 Identities = 152/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || |||||||| || ||||||||||||||| ||||||| Sbjct 5144 CCACCACGCAGACGGAGGACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCA 5203 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || || ||||| |||||||| ||||| ||||| ||||||| |||| Sbjct 5204 AGGGTTCGGCCGTCCTCAAGTTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGA 5263 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||| || | || | |||||| ||||| | Sbjct 5264 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG--ATGGTGTCGGAGGACTCAA 5321 Query 41814 CCTCCACCGTTATCGTTTTACCCGT 41838 |||| | ||||| || || || || Sbjct 5322 CCTCGAGGGTTATGGTCTTTCCGGT 5346 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| |||||||||||||| ||||||| Sbjct 5428 CCACCACGGAGGCGGAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGCA 5487 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || ||||||||||||||||| |||| ||||| ||||| | || Sbjct 5488 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCTGGTGGG 5547 Query 41756 ACGCTCTCCTTGTCC 41770 | || |||||||||| Sbjct 5548 ATGCCCTCCTTGTCC 5562 >seq1257 Length=334001 Score = 118 bits (130), Expect = 1e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || ||||| | ||||| || || || ||||||||| ||||| ||||| Sbjct 8924 ACCACCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 8865 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||||| |||| ||||||||||| |||||||| || || ||||| ||||||| Sbjct 8864 GGCAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 8805 Query 41752 GGGAACGCTCTCCTTGTC 41769 ||||| || ||||||||| Sbjct 8804 GGGAATGCCCTCCTTGTC 8787 >seq400 Length=67953 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||| ||||| ||||||| Sbjct 23248 CCACCACGGAGACGGAGGACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCGGCA 23307 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||| ||||| |||||||| ||||||||||| ||||||| |||| Sbjct 23308 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGA 23367 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | || ||||||||| ||| || Sbjct 23368 ATGCCTTCCTTGTCCTGGATCTT 23390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462294522768000