Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastomyces_20percursus_20[genbank_20GCA_5F001883805.1_202016-11-18] 3,868 sequences; 32,310,953 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1161 125 6e-24 seq602 86.0 5e-12 >seq1161 Length=5408 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| ||| || || ||||| || || ||||| | || || |||||| || || Sbjct 3958 GTGGAGTGTGGATTCCTTTTGGATATTATAATCCGAAAGTGTCCGGCCATCCTCAAGTTG 4017 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 |||||| ||| ||||||| || ||||| || || || || ||||| |||||| ||||| Sbjct 4018 TTTTCCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGGATTTT 4077 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 |||||| | || | ||| || | ||||||||| || | ||| | ||||||||||| Sbjct 4078 GCTTTTAACGTTATCAATGGTATCTGAGCTCTCGACTTCCAGGGTGATAGTTTTGCCGGT 4137 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || || |||||||| Sbjct 4138 CAGTGTCTTAACGAAGATCTGCAT 4161 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || || |||||||| || |||| || ||| ||||| |||||||| ||| Sbjct 3707 CCACCCCGCAACCTCAACACTAAATGGAGAGTGCTCTCCTTTTGGATGTTGTAGTCGGAG 3766 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || ||| || ||||| || ||||| ||||||| |||||||| || || || Sbjct 3767 AGTGTCCGACCATCTTCCAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGA 3826 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || ||||| || |||||| || || | || | || || | |||||| || Sbjct 3827 ATCCCTTCCTTATCCTGAATTTTACTCTTTACGTTGTCAATAGTATCGGAGCTCTCAACT 3886 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || | |||||||||||||| ||||| || ||||||||||| Sbjct 3887 TCGAGTGTGATGGTTTTGCCGGTCAGGGTTTTCACGAAAATCTGCAT 3933 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/197 (71%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || || ||||| || ||||| || ||||| ||| || | Sbjct 4182 CAAGATGGAGAGTCGATTCCTTCTGAATATTATAATCAGACAAGGTGCGGCCATCTTCCA 4241 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTA 118649 |||| ||||| || |||| ||||| |||||||| || || ||||||||||||| ||| | Sbjct 4242 GCTGCTTTCCCGCAAAGATCAGACGTTGCTGATCTGGTGGGATGCCCTCCTTGTCCTGGA 4301 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||| | ||| || | || | ||| || | || ||||| | || | || ||| Sbjct 4302 TTTTACTCTTT-ACATTGTCAATGGTATCAGAAGATTCCACCTCCAATGTAATGGTCTTG 4360 Query 118710 CCGGTCAGAGTTTTTAC 118726 || || |||||||| || Sbjct 4361 CCAGTTAGAGTTTTGAC 4377 >seq602 Length=25977 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| || | |||||| |||||||||||| || || Sbjct 7952 GTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCG 8011 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||| |||| || || ||||| ||||| || || |||||||||||||| Sbjct 8012 GCGAAGATCAGGCGTTGCTGGTCGGGGGGGATTCCCTCCTTGTCTGT 8058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433809948692656