Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastomyces_20percursus_20[genbank_20GCA_5F001883805.1_202016-11-18] 3,868 sequences; 32,310,953 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1161 114 1e-20 seq849 107 2e-18 >seq1161 Length=5408 Score = 114 bits (126), Expect = 1e-20 Identities = 170/237 (72%), Gaps = 8/237 (3%) Strand=Plus/Plus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 ||||| || || | || | |||||| ||||| | |||||||||||||| || ||||| Sbjct 3701 TATTGGCCACCCCGCAACCTCAACACTAAATGGAGAGTGCTCTCCTTTTGGATGTTGTAG 3760 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || | || ||||| | || || |||||||||||||| || ||||| ||||||||||| Sbjct 3761 TCGGAGAGTGTCCGACCATCTTCCAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCT 3820 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCT 43126 | || | | ||||| ||| ||| |||| | | ||| | | | || || ||| Sbjct 3821 GGGGGAATCCCTTCCTTATCC-TGAATTTTACTCTTTACGTTGTCAATAGTATCGGAGCT 3879 Query 43127 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || |||| |||||||||||||| || || || || || || || ||||| Sbjct 3880 C---TCAACTTCGAGTGTGATGGTTTTGCCGGTCAGGGTTTTCACGAAAATCTGCAT 3933 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | | ||| | ||||| || | || |||||| |||||||||||||||| Sbjct 4470 TCCTCCACGGAGACGGAGAACCAAGTGAAGAGTAGACTCCTTCTGAATATTGTAATCAGA 4529 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| || |||| || |||||||| |||||||| || || || |||||||||| || Sbjct 4530 AAGAGTACGGCCGTCTTCCAGCTGCTTTCCAGCGAAAATAAGACGTTGCTGGTCGGGAGG 4589 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGA---GCGTCGCCACCGTGTCGCTCGATTC 43132 | || ||||||| | ||| | || | | | |||||| | || || | || || Sbjct 4590 GATGCCTTCCTTGT-CTTGAATCTTAGACTTAACCGCGTCG--ATAGTATCACCTGACTC 4646 Query 43133 CACATCGACCGTGATGGTTTTGCCCGT 43159 || |||| |||||||| ||||| || Sbjct 4647 AACCTCGAGAGTGATGGTCTTGCCGGT 4673 >seq849 Length=6452 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| ||||| || |||||| || ||||| |||| || |||||||| || || || | Sbjct 1642 CCTTCTGAATGTTATAATCACTAAGCGTCCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGA 1701 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | || |||||||||| || | | |||||||||| |||||| |||| | Sbjct 1702 TCAACCGTTGCTGGTCGGGTGGGATTCCCTCCTTGTCCTGGATTTTGCTCTTGACATTGT 1761 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | |||||||| || || || || | |||||||| ||||||||||| ||||| || | Sbjct 1762 CGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTTAGGGTCTTGACGA 1821 Query 43174 AGATTTGCATTTTT 43187 || | | | ||||| Sbjct 1822 AGCTGTTCGTTTTT 1835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571789952619040