Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastomyces_20percursus_20[genbank_20GCA_5F001883805.1_202016-11-18] 3,868 sequences; 32,310,953 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq295 194 1e-44 seq1161 98.7 9e-16 seq426 98.7 9e-16 >seq295 Length=8791 Score = 194 bits (214), Expect = 1e-44 Identities = 493/739 (67%), Gaps = 16/739 (2%) Strand=Plus/Minus Query 23249 TACTTTTGGTACAACGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTG 23307 ||||||| ||| | ||| ||||| || | || || ||| || |||| ||| |||| || Sbjct 1933 TACTTTTCGTAAAGCGCATCAAACTCTTCGCCATAGACA-TCTGCCAAGCCTGGCGCTTC 1875 Query 23308 CATCGGACACATGAGACTCCACATTG--AGTCATTTTCAACGCGTCTCATAAAAAGATCC 23365 | || || | |||| ||||| | | | || || ||||| || |||| || ||||| Sbjct 1874 ATTGGGGCAAAAGAGAGTCCAC-TCGCCATTC-TTCTCAACACGCTTCATGAACAGATCG 1817 Query 23366 GGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTT 23425 || |||| ||||| || || || |||||||| || || || || || |||||| Sbjct 1816 GGCGTCCAGAGAGCAAGAAAGAGATCTCGGGCGCGAACTTCTTCCTTACCATGGTTCTTA 1757 Query 23426 TTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCG 23485 | |||||||| || || | || | |||||||||||||| |||| || || || Sbjct 1756 CGGAGGTCCAAAAACTCAAAGATATCGGTGTGCCACGGCTCGAGATAAATAGCGAAAGCT 1697 Query 23486 CCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGC 23545 || || | ||| || || ||||||||||| || | || || |||||| | || | ||| Sbjct 1696 CCTGGCCGCTTGTTACCTCCCTGATCGACATATCTAGCGGTATTGTTGAAAACGCGGAGC 1637 Query 23546 ATCGGCACGAGACCGTTGGACGCGCCGCCTACG--CCCGCCACACTCGAACCTTTTGCTC 23603 || || || | || || || | | | | || ||||| | || || | | | Sbjct 1636 ATGGGAACAATTCCATTTGAGGAAC--CATTCGTTCCCGCAATGTAAGAGCCAGTACCAC 1579 Query 23604 GAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTT 23663 ||| | ||||| || || ||| || || || | | || || |||| || || || Sbjct 1578 GAATGCGGTGAATGTTGAGACCAATACCACCAGCAGTCTTTGAAATCAAAGCACAAGTTT 1519 Query 23664 TCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAG 23723 ||| |||||||| || |||||||| ||||| || || | ||| | || || |||| Sbjct 1518 TCAACGTGTCGTAAATACCCTCGATACTGTCTTCCTTCATATCGATGAGAAAGCAAGAAG 1459 Query 23724 ACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATC 23783 ||| || | || ||| ||| | || ||| ||||| || ||||| || || || Sbjct 1458 CCATCTGAGGTTGGGGGGTACCAGCATTGAAGAGTGTGGGAGAAGCGTGAGTGAAAAATT 1399 Query 23784 CATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGA 23843 | ||||| ||||| || || |||||| | || | || || || || || || | Sbjct 1398 TCTGGGACATGAGATTATAGGTCTCGATGACTTTCTCTACATCATCCCCATGAATTCCAA 1339 Query 23844 TGGCGACGCGCATCATCATGTATTGAGGTC--TC-TCGACCGTGACGCCGTTAATTTTGA 23900 || || ||||| ||||||| ||| || | || | ||| | ||| || ||| | Sbjct 1338 CAGCAACACGCATGATCATGTGTTGCGGGCGTTCAGCAACCTT---GCCATTGATTCGAA 1282 Query 23901 ACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGT 23960 |||||| || || | || ||||| ||||| || || | ||||| || |||||||| | Sbjct 1281 GCAGATAAGACCGCTCCAGGGTTTTGAATCCGAAGTATTGGTAGTTGAAATCACGATCAT 1222 Query 23961 GCACTATGGCCGAATTCAA 23979 || ||||| || || || Sbjct 1221 AGACAATGGCAGAGTTAAA 1203 >seq1161 Length=5408 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || || ||||| |||||||| ||||| |||| ||||| ||| Sbjct 3933 ATGCAGATTTTCGTGAAAACCCTGACCGGCAAAACCATCACACTCGAAGTTGAGAGCTCC 3874 Query 31253 GACAGTGTCGAAACGGTCAAACAG-AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | || | || ||| || | ||| ||| |||||||| | || || ||||| Sbjct 3873 GATACTATTGACAACGT-AAAGAGTAAAATTCAGGATAAGGAAGGGATTCCCCCAGACCA 3815 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || ||||| || ||| ||||||| | ||| | ||| || || Sbjct 3814 GCAGCGCCTCATCTTTGCTGGTAAGCAGCTGGAAGATGGTCGGACACTCTCCGACTACAA 3755 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| ||||| || ||||| ||| | || | || || |||| || Sbjct 3754 CATCCAAAAGGAGAGCACTCTCCATTTAGTGTTGAGGTTGCGGGGTGG 3707 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 31286 GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAA 31345 |||||||||||| | || ||||||||||| ||||| || |||||||| || ||| ||||| Sbjct 4604 GACAAGGAAGGCATCCCTCCCGACCAGCAACGTCTTATTTTCGCTGGAAAGCAGCTGGAA 4545 Query 31346 GACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| ||| | ||||| || ||||| || || || |||||||| |||| || Sbjct 4544 GACGGCCGTACTCTTTCTGATTACAATATTCAGAAGGAGTCTACTCTTCACTTGGTTCT 4486 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| || ||||| || ||||| || || || | || || ||| | || || | | | Sbjct 4379 TCGTCAAAACTCTAACTGGCAAGACCATTACATTGGAGGTGGAATCTTCTGATACCATTG 4320 Query 31263 AAACGGTCAAACAG-AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 | | || ||| || | ||| ||||||||| ||| | || || || ||||| ||||| Sbjct 4319 ACAATGT-AAAGAGTAAAATCCAGGACAAGGAGGGCATCCCACCAGATCAGCAACGTCTG 4261 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || || || || || ||| ||||||| || || |||||||| ||||| || Sbjct 4260 ATCTTTGCGGGAAAGCAGCTGGAAGATGGCCGCACCTTGTCTGATTATAATATTCAGAAG 4201 Query 31382 GAATCGACTCTTCATCTGGTACTT 31405 ||||||||||| ||||| || ||| Sbjct 4200 GAATCGACTCTCCATCTTGTCCTT 4177 >seq426 Length=8128 Score = 98.7 bits (108), Expect = 9e-16 Identities = 205/302 (68%), Gaps = 9/302 (3%) Strand=Plus/Plus Query 57553 CGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCG 57612 ||||| ||||| | || ||| | ||||| || || || || || || || ||||| | Sbjct 4390 CGATTCAATAT----AGATCTGGCAAATGTATAAGAAAGCGGAGGCGTCATTCTGGACTG 4445 Query 57613 TCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTG 57669 |||||| | || || || || ||||| ||||||| | | | || || || Sbjct 4446 CAGAAGAAATTGATCTCTCGAAAGATCTTCACGATTGGAACAACAGATTGAACGACGATG 4505 Query 57670 AGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACG 57729 || || ||||||| || || ||||| ||||||||||| || ||||| ||||| |||| Sbjct 4506 AGCGATATTTTATCTCCCATGTCTTGGCATTTTTCGCCGCCTCGGATGGCATTGTCAACG 4565 Query 57730 AGAATTTGGTCGAAAGATTTTCACA-AGAAGTGCAAGTGACGGAGGCGAGATGCTTTTAC 57788 |||| ||||||| | |||| || ||||| || || | ||||| | ||||| || Sbjct 4566 AGAACCTGGTCGAGCG-TTTTAGCAGTGAAGTTCAGGTACCTGAGGCTCGCTGCTTCTAT 4624 Query 57789 GGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACG 57848 || || || | || ||||| | || || || | || || || || ||||| || Sbjct 4625 GGCTTCCAGATCATGATGGAAAATATTCACTCCGAGACTTACTCCCTCCTAATCGACACA 4684 Query 57849 TA 57850 || Sbjct 4685 TA 4686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445744847194560