Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastomyces_20percursus_20[genbank_20GCA_5F001883805.1_202016-11-18] 3,868 sequences; 32,310,953 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1161 134 3e-26 >seq1161 Length=5408 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| || ||||| | || ||||| |||||||||||||| ||| Sbjct 4160 ATTCCACCACGGAGACGAAGGACAAGATGGAGAGTCGATTCCTTCTGAATATTATAATCA 4219 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | || ||||| || || ||||| ||||| || || | || ||||| || Sbjct 4220 GACAAGGTGCGGCCATCTTCCAGCTGCTTTCCCGCAAAGATCAGACGTTGCTGATCTGGT 4279 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTC 104508 || || || || || ||||| || ||| || |||||||| || | |||||| || ||| Sbjct 4280 GGGATGCCCTCCTTGTCCTGGAT-TTTACTCTTTACATTGTCAATGGTATCAGAAGATTC 4338 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | |||||| ||||| ||||| || ||||| || | | | ||||| Sbjct 4339 CACCTCCAATGTAATGGTCTTGCCAGTTAGAGTTTTGACGACTGTGTGCAT 4389 Score = 104 bits (114), Expect = 5e-17 Identities = 142/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || || || || ||||| || || || | ||| ||||| || || || |||||||| Sbjct 3743 TCCTTTTGGATGTTGTAGTCGGAGAGTGTCCGACCATCTTCCAGCTGCTTACCAGCAAAG 3802 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TTTACATT 104487 || || | ||| || || || || || ||||| ||||||||||| ||| || ||||| || Sbjct 3803 ATGAGGCGCTGCTGGTCTGGGGGAATCCCTTCCTTATCCTGAAT-TTTACTCTTTACGTT 3861 Query 104488 TTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTA 104546 || | |||||| || | || || || ||||| || || || || || || ||||| | Sbjct 3862 GTCAATAGTATCG-GAGCTCTCAACTTCGAGTGTGATGGTTTTGCCGGTCAGGGTTTTCA 3920 Query 104547 CAAATATCTGCAT 104559 | || |||||||| Sbjct 3921 CGAAAATCTGCAT 3933 Score = 104 bits (114), Expect = 5e-17 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || | ||| ||||| || || |||||||| || || || || | || || Sbjct 3950 AGGACAAGGTGGAGTGTGGATTCCTTTTGGATATTATAATCCGAAAGTGTCCGGCCATCC 4009 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||||||||| || || || || | || || || || || || || ||||| || Sbjct 4010 TCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGGATACCCTCTTTGTCT 4069 Query 104468 TGAATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525 || || ||||||||| || || || | |||||| || | || || || || || |||| Sbjct 4070 TGGAT-TTTGCTTTTAACGTTATCAATGGTATC-TGAGCTCTCGACTTCCAGGGTGATAG 4127 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 | || || || ||||| || || || ||||||||| Sbjct 4128 TTTTGCCGGTCAGTGTCTTAACGAAGATCTGCATT 4162 Score = 100 bits (110), Expect = 7e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||||||||| || ||||| ||||| | |||||||| || || |||||| Sbjct 4501 GTAGACTCCTTCTGAATATTGTAATCAGAAAGAGTACGGCCGTCTTCCAGCTGCTTTCCA 4560 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | || || || ||||| || ||||| || || |||||||| | || Sbjct 4561 GCGAAAATAAGACGTTGCTGGTCGGGAGGGATGCCTTCCTTGTCTTGAATCTTAGACTTA 4620 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || || | ||||| | | || ||||| || || || ||||| || || Sbjct 4621 ACCGCGTCGATAGTATCACCTGACTCAACCTCGAGAGTGATGGTCTTGCCGGT 4673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151341338134544