Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastomyces_20percursus_20[genbank_20GCA_5F001883805.1_202016-11-18] 3,868 sequences; 32,310,953 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1161 113 4e-20 seq295 87.8 2e-12 >seq1161 Length=5408 Score = 113 bits (124), Expect = 4e-20 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 || || || || || ||||||||||||||||||||||| || || | | ||| | Sbjct 3953 ACAAGGTGGAGTGTGGATTCCTTTTGGATATTATAATCC--GAAAGTGTCCGGCCATCCT 4010 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | | ||||||||| ||| | || | |||||||||||| || || || || ||||| |||| Sbjct 4011 CAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGGATACCCTCTTTGTCTT 4070 Query 45250 GAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 | | |||| ||| | || | || | ||| || || ||||||||| || || | ||| Sbjct 4071 GGA-TTTTGCTTTTAACGTTATCAATGGTATCTGAGCTCTCGACTTCCAGGGTGATAGTT 4129 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| || || || || || || ||||| Sbjct 4130 TTGCCGGTCAGTGTCTTAACGAAGATCTGCAT 4161 Score = 109 bits (120), Expect = 5e-19 Identities = 168/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 45108 TTTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTAT 45165 |||||| || || || | ||||||||||| ||| || || ||||||||||| || | Sbjct 3699 TTTATTGGCCACCCCGCAACCTCAACACTAAATGGAGAGTGCTCTCCTTTTGGATGTTGT 3758 Query 45166 AATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGT 45225 | ||| || || | ||| |||| || || || || | || | || ||||||| Sbjct 3759 AGTCGGAGAGTGTCCGACCATCTTCCAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGT 3818 Query 45226 CCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAA 45284 | || ||||| ||||| ||||| |||||||| || | || | || | || ||||| Sbjct 3819 CTGGGGGAATCCCTTCCTTATCCTGAATTTTACTCTTTA-CGTTGTCAATAGTATCGGAG 3877 Query 45285 GACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| |||||||| || | ||||||||||| || ||||| || ||||| ||||| Sbjct 3878 CTCTCAACTTCGAGTGTGATGGTTTTGCCGGTCAGGGTTTTCACGAAAATCTGCAT 3933 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || ||||| | | || ||||| || || |||||||| || ||||||||||| Sbjct 4160 ATTCCACCACGGAGACGAAGGACAAGATGGAGAGTCGATTCCTTCTGAATATTATAATCA 4219 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| |||| || ||||| || | |||| |||||||| || || Sbjct 4220 GACAAGGTGCGGCCATCTTCCAGCTGCTTTCCCGCAAAGATCAGACGTTGCTGATCTGGT 4279 Query 45231 GGAATGCCTTCTTTATCTTGAATTTT--TTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 || ||||| || || || || ||||| | || || | || | ||| || ||||| | Sbjct 4280 GGGATGCCCTCCTTGTCCTGGATTTTACTCTTTACATTG--TCAATGGTATCAGAAGATT 4337 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 | || || | |||| || ||||| ||||||||||| || Sbjct 4338 CCACCTCCAATGTAATGGTCTTGCCAGTTAGAGTTTTGAC 4377 >seq295 Length=8791 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || ||||| | |||| ||||| ||||||||||| ||||||| ||| | ||| || | Sbjct 2073 GAGACCGGTAACCCGTTTATGCTTTACAAAGACGCGTGCAACAAGAAGAGCAACCAAAAG 2132 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCC 123725 |||||||| ||||| | | | ||| || ||| |||| || || ||||| || | Sbjct 2133 AACTTGGGCACAATCAGAAGCTCTAACCTGTGCACCGAGATCATTGAATATTGCTCGCCA 2192 Query 123726 GATCAAGTGGCCGTGTGTAATTTGGCTTCGATT 123758 ||| |||| || || || |||||||| || ||| Sbjct 2193 GATGAAGTAGCGGTTTGCAATTTGGCGTCTATT 2225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451981345645280