Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastomyces_20percursus_20[genbank_20GCA_5F001883805.1_202016-11-18] 3,868 sequences; 32,310,953 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq368 116 3e-20 seq1161 107 2e-17 seq1018 104 2e-16 >seq368 Length=8423 Score = 116 bits (128), Expect = 3e-20 Identities = 356/540 (66%), Gaps = 19/540 (4%) Strand=Plus/Plus Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||| |||||||| || || |||||| |||| ||||| || | ||| ||||||| || Sbjct 6002 GAAATCATTGCCAACGACCAGGGTAACCGAACCACTCCCTCGTTCGTTGCTTTCACAGAC 6061 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 || |||| | | |||||||| || || | |||| | | || || ||||| || Sbjct 6062 ACAGAACGCCTCATCGGTGATGCCGCGAAGAACCAAGTCGCCATGAACCCAACCAACACA 6121 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 | || || || || ||| | ||||| | | || || | |||||| | || Sbjct 6122 GTGTTCGACGCAAAGCGTCTCATTGGCCGCAAGTTCGCCGACCCTGAGGTTCAGTCTGAC 6181 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTT---AATGTTTCTGGAAAACCTTATATTGAAG-C 550290 |||||||| | || ||| | || || || | || || ||| ||| ||| | Sbjct 6182 ATGAAGCACTTCCCCTTCAAGATCGTCGACAAGGCCTCC---AAGCCTGTCATTCAAGTC 6238 Query 550291 TACTCATGAAGGATCTGT-TAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 | | | |||| | ||| | || | || || |||| || |||||||| | | Sbjct 6239 GAGT--TCAAGGGCGAGACTAAGGAGTTCACTCCTGAGGAAATCTCCTCTATGGTCCTCA 6296 Query 550350 TGAAAATGAAACAAACAGCC-AGTGCTT--TTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 || |||| | | || ||| | | || ||| || || || | |||| || Sbjct 6297 CCAAGATGAGAGAGACTGCCGAATCCTACCTTGGCGG-CACT--GTCAACAATGCCGTCG 6353 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | || || || || || || ||||||||||| ||||||||||| || |||||||| | | Sbjct 6354 TCACCGTCCCCGCTTACTTCAATGACTCACAGCGTCAAGCTACCAAGGATGCTGGTCTCA 6413 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 |||| || || ||||| || ||||| || || || |||||||| ||||| |||| || | Sbjct 6414 TTGCCGGCCTCAATGTCCTCCGTATCATTAACGAGCCTACTGCCGCTGCTATTGCTTACG 6473 Query 550527 GACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATT---GTGGAGGTA 550583 | ||||| || | |||| |||| ||||| ||||| || || | |||| |||| Sbjct 6474 GTCTTGACAAGAAGGCTGATGGCGAACGCAATGTTCTCATTTTCGACTTAGGTGGTGGTA 6533 >seq1161 Length=5408 Score = 107 bits (118), Expect = 2e-17 Identities = 159/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314 |||||||| ||||| || || || ||| ||||| ||||| ||||| | || || | Sbjct 3944 AGACGGAGGACAAGGTGGAGTGTGGATTCCTTTTGG--ATATTATAATCCGAAAGTGTCC 4001 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 ||| ||||||||||||||||| || || |||| |||||| || || || || || | Sbjct 4002 GGCCATCCTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGGATACCCT 4061 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAGA 563433 |||| ||||| ||||| ||| || ||||| ||||| | | | || ||| || Sbjct 4062 CTTTGTCTTGGATTTTGCTTTTAACGTTATCAATGGTATCTGAGCTCTCGAC-TTCCAGG 4120 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | |||||| || || || || |||||||| || ||||| Sbjct 4121 GTGATAGTTTTGCCGGTCAGTGTCTTAACGAAGATCTGCAT 4161 Score = 95.1 bits (104), Expect = 1e-13 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||||||||| || | ||||| ||| || || |||||||||||||| ||||| | Sbjct 4479 GAGACGGAGAACCAAGTGAAGAGTAGACTCCTTCTGAATATTGTAATCAGAAAGAGTACG 4538 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||||| || || ||||| || |||||||| | |||||| || ||||| || ||||| Sbjct 4539 GCCGTCTTCCAGCTGCTTTCCAGCGAAAATAAGACGTTGCTGGTCGGGAGGGATGCCTTC 4598 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCA 563415 || |||||||| || || || || || || |||||| Sbjct 4599 CTTGTCTTGAATCTTAGACTTAACCGCGTCGATAGTATCA 4638 >seq1018 Length=5916 Score = 104 bits (114), Expect = 2e-16 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || ||||| || || ||||||||||| || |||||||| | || Sbjct 955 ACTGTTCCTGCCTACTTCAATGATTCGCAGCGTCAAGCTACCAAGGATGCTGGTCAGATC 1014 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| || ||||| ||||| || |||| || ||||| || ||||| |||||||| || Sbjct 1015 GCTGGTCTCAATGTGCTTCGCGTTGTCAACGAGCCTACCGCCGCTGCTCTTGCATACGGT 1074 Query 550529 CTTGA 550533 ||||| Sbjct 1075 CTTGA 1079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029091442715320