Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastomyces_20percursus_20[genbank_20GCA_5F001883805.1_202016-11-18] 3,868 sequences; 32,310,953 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1161 123 2e-22 >seq1161 Length=5408 Score = 123 bits (136), Expect = 2e-22 Identities = 125/163 (77%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || | ||||| ||| || || || ||| ||||||| ||||| Sbjct 4476 ACGGAGACGGAGAACCAAGTGAAGAGTAGACTCCTTCTGAATATTGTAATCAGAAAGAGT 4535 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||||| || ||||||||||| |||||||||||||| || || ||||| || || Sbjct 4536 ACGGCCGTCTTCCAGCTGCTTTCCAGCGAAAATAAGACGTTGCTGGTCGGGAGGGATGCC 4595 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 |||||||||||||||||| || || || || ||||||||| Sbjct 4596 TTCCTTGTCTTGAATCTTAGACTTAACCGCGTCGATAGTATCA 4638 Score = 113 bits (124), Expect = 3e-19 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||||||||| ||||| || ||||| ||| || | ||||||||| | || || Sbjct 3941 CGAAGACGGAGGACAAGGTGGAGTGTGGATTCCTTTTGGATATTATAATCCGAAAGTGTC 4000 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||| |||||||| ||||| || || || || ||||| || || || || || || Sbjct 4001 CGGCCATCCTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGGATACCC 4060 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAG 480730 || |||||||| || || ||| || ||||| ||||| | | | | | ||| || Sbjct 4061 TCTTTGTCTTGGATTTTGCTTTTAACGTTATCAATGGTATCTGAGCTCTCGA-CTTCCAG 4119 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| |||||||| ||||| || ||||||||||| || || Sbjct 4120 GGTGATAGTTTTGCCGGTCAGTGTCTTAACGAAGATCTG 4158 Score = 98.7 bits (108), Expect = 6e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || |||||||| || || ||| || || ||||||||||| | || Sbjct 4168 ACGGAGACGAAGGACAAGATGGAGAGTCGATTCCTTCTGAATATTATAATCAGACAAGGT 4227 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| || |||||||| ||||| || |||||||| ||||| || || || || Sbjct 4228 GCGGCCATCTTCCAGCTGCTTTCCCGCAAAGATCAGACGTTGCTGATCTGGTGGGATGCC 4287 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG 480714 |||||||| || || || || ||| ||||| ||||||| Sbjct 4288 CTCCTTGTCCTGGATTTTACTCTTTACATTGTCAATGGTATCAG 4331 Score = 86.0 bits (94), Expect = 4e-11 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| |||||||| || || || || || || || ||||| |||||||| Sbjct 3778 ATCTTCCAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGAATCCCTTCCTT 3837 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTAA 480735 || ||||| || || || ||||||||||| | | | | || ||| || || | Sbjct 3838 ATCCTGAATTTTACTCTTTACGTTGTCAATAGTATCGGAGCTCTCAA-CTTCGAGTGTGA 3896 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| ||||| || || || |||||||| || Sbjct 3897 TGGTTTTGCCGGTCAGGGTTTTCACGAAAATCTG 3930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268013282712464