Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastomyces_20percursus_20[genbank_20GCA_5F001883805.1_202016-11-18] 3,868 sequences; 32,310,953 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1161 183 9e-41 seq368 179 1e-39 seq1846 123 8e-23 >seq1161 Length=5408 Score = 183 bits (202), Expect = 9e-41 Identities = 172/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || |||||||| ||||| || || || |||||||||||||| Sbjct 4159 CATTCCACCACGGAGACGAAGGACAAGATGGAGAGTCGATTCCTTCTGAATATTATAATC 4218 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| || || || |||||||| || || ||||| |||||||| |||||||||||||| || Sbjct 4219 AGACAAGGTGCGGCCATCTTCCAGCTGCTTTCCCGCAAAGATCAGACGTTGCTGATCTGG 4278 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| |||||| |||||||| ||||| | |||||| | ||| Sbjct 4279 TGGGATGCCCTCCTTGTCCTGGATTTTACTCTTTACATTGTCAATGGTATCAGAAGATTC 4338 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || | ||||| ||||| || ||||| ||||| || Sbjct 4339 CACCTCCAATGTAATGGTCTTGCCAGTTAGAGTTTTGAC 4377 Score = 161 bits (178), Expect = 3e-34 Identities = 177/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || ||||| || || || || || ||||| ||||||||||| Sbjct 3931 CATACCACCCCGAAGACGGAGGACAAGGTGGAGTGTGGATTCCTTTTGGATATTATAATC 3990 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||| || ||||| |||||||||||||| || ||||| || |||||||| || || Sbjct 3991 CGAAAGTGTCCGGCCATCCTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGGTCTGG 4050 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTT 140685 || || || ||||| || || ||||| |||||| || |||||||| | ||| || | Sbjct 4051 TGGGATACCCTCTTTGTCTTGGATTTT-GCTTTTAACGTTATCAATGGTATCTGAGCTCT 4109 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | ||||| || || | || || ||||| ||||| || || || ||||||||| Sbjct 4110 CGACTTCCAGGGTGATAGTTTTGCCGGTCAGTGTCTTAACGAAGATCTGCATT 4162 Score = 158 bits (174), Expect = 4e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 ||||| || || || | || | ||| ||||| ||| ||||| || || || || || Sbjct 3707 CCACCCCGCAACCTCAACACTAAATGGAGAGTGCTCTCCTTTTGGATGTTGTAGTCGGAG 3766 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | ||| || |||||||| || || || ||||||||||| || || ||||| || || ||| Sbjct 3767 AGTGTCCGACCATCTTCCAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGA 3826 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || ||||| ||||||||||||||| ||||| || ||||| | ||| || |||||| Sbjct 3827 ATCCCTTCCTTATCCTGAATTTTACTCTTTACGTTGTCAATAGTATCGGAGCTCTCAACT 3886 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| | || || ||||| || ||||| || ||||||||||| Sbjct 3887 TCGAGTGTGATGGTTTTGCCGGTCAGGGTTTTCACGAAAATCTGCAT 3933 Score = 131 bits (144), Expect = 5e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | ||||| | |||||||||||||| || |||||||| ||||| Sbjct 4467 CATTCCTCCACGGAGACGGAGAACCAAGTGAAGAGTAGACTCCTTCTGAATATTGTAATC 4526 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || || ||||| || || |||||||| || || ||||||||||| || || Sbjct 4527 AGAAAGAGTACGGCCGTCTTCCAGCTGCTTTCCAGCGAAAATAAGACGTTGCTGGTCGGG 4586 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || ||||| || || ||||| |||| || || || || | |||| || || Sbjct 4587 AGGGATGCCTTCCTTGTCTTGAATCTTAGACTTAACCGCGTCGATAGTATCACCTGACTC 4646 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||| || || || | ||||| ||||| Sbjct 4647 AACCTCGAGAGTGATGGTCTTGCCGGT 4673 >seq368 Length=8423 Score = 179 bits (198), Expect = 1e-39 Identities = 475/723 (66%), Gaps = 3/723 (0%) Strand=Plus/Plus Query 349202 ATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTA 349261 ||||| |||||||| ||||| || || || || || | | | | |||| ||| | Sbjct 5942 ATAGGTATCGATTTGGGTACCACGTACTCCTGCGTGGGCATCTTCCGTGATGACCGTATC 6001 Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 ||||| ||||| || || || |||||| |||| || || || | |||||| || || || Sbjct 6002 GAAATCATTGCCAACGACCAGGGTAACCGAACCACTCCCTCGTTCGTTGCTTTCACAGAC 6061 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || || || | || |||||| | || || || |||| || || |||| || || Sbjct 6062 ACAGAACGCCTCATCGGTGATGCCGCGAAGAACCAAGTCGCCATGAACCCAACCAACACA 6121 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGAT 349441 || || || || ||||| || ||||| | | || | ||| || ||||| Sbjct 6122 GTGTTCGACGCAAAGCGTCTCATTGGCCGCAAGTTCGCCGACCCTGAGGTTCAGTCTGAC 6181 Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501 | || || || || || | | || | | ||| | | | || | ||| | || Sbjct 6182 ATGAAGCACTTCCCCTTCAAGATCGT-CGACAAGGCCTCCA--AGCCTGTCATTCAAGTC 6238 Query 349502 GAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTT 349561 || | || || || || | || || || ||||| || || ||||| | Sbjct 6239 GAGTTCAAGGGCGAGACTAAGGAGTTCACTCCTGAGGAAATCTCCTCTATGGTCCTCACC 6298 Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || |||| || | ||| ||| | || | || | || || | |||| || | || Sbjct 6299 AAGATGAGAGAGACTGCCGAATCCTACCTTGGCGGCACTGTCAACAATGCCGTCGTCACC 6358 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || || || || ||||| | |||||| || || || |||||||| |||||| Sbjct 6359 GTCCCCGCTTACTTCAATGACTCACAGCGTCAAGCTACCAAGGATGCTGGTCTCATTGCC 6418 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | ||||| || | || ||||| || || ||||| || || ||||| || || ||| Sbjct 6419 GGCCTCAATGTCCTCCGTATCATTAACGAGCCTACTGCCGCTGCTATTGCTTACGGTCTT 6478 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 || || | | ||| ||| ||| |||| ||||| || ||||||||||||||||| Sbjct 6479 GACAAGAAGGCTGATGGCGAACGCAATGTTCTCATTTTCGACTTAGGTGGTGGTACTTTC 6538 Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861 ||||| || || || || | |||||||| || ||||| || || | || || |||||| Sbjct 6539 GATGTTTCCCTCCTCACCATCGAAGAGGGTATCTTTGAGGTCAAGTCCACCGCCGGTGAT 6598 Query 349862 ACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTT 349921 || || | ||||| || || ||||| || || |||||| || ||||| | || || Sbjct 6599 ACTCACTTGGGTGGTGAGGACTTTGACAACCGACTCGTTAATCACTTTGTCCAGGAGTTC 6658 Query 349922 AAG 349924 ||| Sbjct 6659 AAG 6661 >seq1846 Length=21677 Score = 123 bits (136), Expect = 8e-23 Identities = 245/357 (69%), Gaps = 8/357 (2%) Strand=Plus/Minus Query 378121 TCAAATCCATCATCTCCATATGAGAATTGAACAATTTTATCTTT-ATTG--TTTCTTACA 378177 || || ||||| |||||||| |||| || |||| |||| | || || | || Sbjct 15651 TCCAAACCATCCTCTCCATACAAGAACTGGACAAC---ATCTCCCAGTGAGTTGCGAACT 15595 Query 378178 GTCATATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAA 378237 || ||| ||| ||||||| | || || | ||||| | ||| || ||||| Sbjct 15594 GTACCATCGTATTTAACCATGACCTCCTCCAGGGCTTTGACAAGCTTCCGCTGGATATAT 15535 Query 378238 CCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGG 378297 || |||| | || || || ||||| ||||| | ||| |||||||| |||| |||||| Sbjct 15534 CCCGTTTCAGCTGTCTTGACAGCAGTGTCAATCAGACCCTCACGACCAGCCATAGCATGG 15475 Query 378298 AAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCG 378357 ||||| || || || || ||||| |||| | | | ||| | || | || || | | Sbjct 15474 AAGAAAAACTCTGTGGGCGTAAGGCCACGGAGATACGAATTTTCGACGAAACCACGAGAC 15415 Query 378358 CCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGAT-TCTCAAACCCATATGG 378416 | || |||| ||||| |||||| |||| || || ||||||| | | ||||| | |||| Sbjct 15414 TCGGGAGAATAATCATCCTTTGTAAAATGCGGCAAAGTACGATATTTGAAACCGA-ATGG 15356 Query 378417 AATTCGTTTTCCATCAACATTCTGTTGACCAAGTGCAGAAACCATTTGAGCAATATT 378473 ||| ||||| || |||||| || || |||| ||| | |||||||| ||||| Sbjct 15355 AATACGTTTGCCTTCAACAGATTGCTGGCCAACAACAGCAGTCATTTGAGAGATATT 15299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515179305886004